Khan M M - OmicsDI

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Unknown (12693)
Proteomics (170)
Transcriptomics (128)
Genomics (33)
Models (22)
Metabolomics (14)
Genomic (1)
Other (1)
Multiomics (1)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (152)
Alteromonadales (152)
Bacteria (152)
Canis lupus familiaris (152)
Carya cathayensis (152)
Homo sapiens (61)
Mus musculus (51)
Saccharomyces cerevisiae (19)
Arabidopsis thaliana (9)
Gallus gallus (5)
Toxoplasma gondii (3)
Staphylococcus aureus (3)
Bos taurus (2)
Plasmodium falciparum (2)
Sus scrofa (2)
Drosophila melanogaster (2)
Aedes albopictus (1)
Cicer arietinum (1)
Porphyromonas gingivalis ATCC 33277 (1)
Streptococcus mutans UA159 (1)
Macaca mulatta (1)
Enterococcus faecalis OG1RF (1)
Plasmodium berghei (1)
unidentified (1)
Mycobacterium tuberculosis (1)
Vibrio cholerae (1)
Glycine max (1)
Rattus norvegicus (1)
Danio rerio (1)
Equus asinus x Equus caballus (1)

Organisms

Homo sapiens (2)
Ceratocystis dalbergiae (nom. inval.) (1)
Sinorhizobium meliloti (1)
gut metagenome (1)

Repository

pride (152)
biostudies-arrayexpress (140)
BioModels (22)
ENA (13)
MetaboLights (12)
EGA (10)
MassIVE (10)
iProX (3)
GNPS (2)
jPOST (2)
dbGaP (1)
GPMDB (1)
PeptideAtlas (1)

Tissue

Cell culture (26)
Brain (12)
Epithelial cell (11)
Lung (8)
Whole body (7)
Kidney (6)
Liver (6)
Blood (5)
Blood serum (5)
Permanent cell line cell (5)
Plant cell (5)
T cell (5)
B cell (4)
Blood plasma (4)
Fibroblast (4)
Heart (4)
Root (4)
Colon (3)
Leaf (3)
Lymph (3)
Blood cell (2)
Bone marrow (2)
Corneal endothelial cell (2)
Embryonic stem cell (2)
Endothelial cell (2)
Esophagus (2)
Lens (2)
Lymph node (2)
Mesenchymal cell (2)
Primary cell (2)

Disease

Disease free (11)
Breast cancer (3)
Lung cancer (3)
Wounds and Injuries (3)
Neuroblastoma (2)
Acute leukemia (2)
Chronic lymphocytic leukemia (2)
Inflammatory bowel disease (2)
Non-small cell lung carcinoma (2)
Parkinson's disease (2)
Systemic juvenile idiopathic arthritis (1)
Invasive carcinoma (1)
Control (1)
Not Available (1)
Acral lentiginous melanoma (1)
Alveolar rhabdomyosarcoma (1)
Alzheimer's disease (1)
Aortic valve stenosis (1)
Atrial fibrillation (1)
Brain cancer (1)
Brain glioblastoma multiforme (1)
Cachexia (1)
Cervix carcinoma (1)
Chronic myeloid leukemia (1)
Colon cancer (1)
Colorectal cancer (1)
Esophagus squamous cell carcinoma (1)
Glioblastoma (1)
Head and neck squamous cell carcinoma (1)
Infertility (1)

Technology Type

Mass Spectrometry (152)
Shotgun proteomics (82)
Bottom-up proteomics (31)
Affinity purification coupled with mass spectrometry proteomics (20)
Data-dependent acquisition (11)
Mass spectrometry (10)
Data-independent acquisition (10)
Gel-based experiment (8)
SWATH MS (4)
Top-down proteomics (4)
Mass spectrometry assay (2)
Affinity proteomics (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Illumina HiSeq 2500 (1)
All-ion fragmentation (1)
DiaPASEF (1)
Gel-free quantification method (1)
Glycoproteomics (1)
HDMSE (1)
MSE (1)
Mass spectrometry imaging (1)
Proteogenomics (1)
SRM/MRM (1)

Instrument Platform

Illumina HiSeq 4000 (13)
Q Exactive (5)
Liquid Chromatography MS - positive - reverse phase (4)
Liquid Chromatography MS - negative - reverse phase (4)
Illumina MiSeq (3)
Illumina NovaSeq 6000 (2)
NextSeq 500 (2)
Q Exactive Plus (2)
TripleTOF 5600 (2)
LTQ Orbitrap Elite (2)
Orbitrap Fusion (2)
LTQ Orbitrap Velos (2)
3' v3.1 10X (1)
454 GS FLX (1)
Illumina HiSeq (1)
Chromium X (1)
NextSeq 2000 (1)
HiSeq X Ten (1)
Illumina HiSeq 1500 (1)
NextSeq 550 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
ACQUITY UPLC H-Class (1)
Instrument (1)
Orbitrap Eclipse (1)
Orbitrap Exploris 480 (1)
6230 TOF LC/MS (Agilent) (1)
2D Gas Chromatography MS – Positive (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2021 (33)
2025 (29)
2023 (25)
2024 (23)
2014 (22)
2005 (21)
2026 (20)
2022 (19)
2013 (19)
2010 (18)
2020 (16)
2012 (16)
2016 (15)
2015 (13)
2011 (13)
2018 (12)
2019 (9)
2017 (8)
2007 (5)
2008 (4)
2009 (3)

UNIPROT ID/AC

Q00764 (13)
P31688 (13)
P33401 (13)
P37012 (13)
P32861 (13)
P00549 (1)
P04806 (1)
P00560 (1)
P16862 (1)
P16861 (1)
P00924 (1)
P00950 (1)
P00360 (1)
P06169 (1)
P12709 (1)
P14540 (1)
A0EQY3 (1)
A0JLQ7 (1)
A0PJC8 (1)
A0PJD7 (1)
A1A558 (1)
A1A596 (1)
A1E5T5 (1)
A1IGX7 (1)
A1L013 (1)
A1L0U3 (1)
A1L0U6 (1)
A1L317 (1)
A1L347 (1)
A1L366 (1)

ENSEMBL ID

ENSMUSG00000021039 (1)
ENSMUSG00000032652 (1)
ENSMUSG00000090272 (1)
ENSMUSP00000141097 (1)
ENSMUSP00000141637 (1)

CHEBI ID

CHEBI:15422 (24)
CHEBI:15846 (23)
CHEBI:29052 (21)
CHEBI:15343 (21)
CHEBI:17835 (21)
CHEBI:17794 (21)
CHEBI:16001 (21)
CHEBI:16761 (21)
CHEBI:16908 (21)
CHEBI:16108 (21)
CHEBI:18021 (21)
CHEBI:4167 (20)
CHEBI:16551 (20)
CHEBI:16027 (20)
CHEBI:28602 (20)
CHEBI:17754 (20)
CHEBI:16236 (20)
CHEBI:15361 (20)
CHEBI:16084 (19)
CHEBI:28013 (19)
CHEBI:30031 (19)
CHEBI:17665 (19)
CHEBI:18066 (17)
CHEBI:15978 (16)
CHEBI:16077 (14)
CHEBI:17659 (14)
CHEBI:46398 (13)
CHEBI:18283 (13)
CHEBI:30089 (12)
CHEBI:28087 (7)

Metabolite Name

AMP (4)
Pyroglutamic Acid (3)
S-methylcysteine (3)
Glycerol 3-phosphate (3)
Gamma-glutamyltryptophan (3)
Gamma-glutamylphenylalanine (3)
Gamma-glutamylglutamate (3)
2'-deoxycytidine (3)
1-palmitoyl-GPE (16:0) (3)
1-palmitoyl-2-oleoyl-GPC (16:0/18:1) (3)
Leucine (3)
Serine (3)
Phosphocholine (3)
Glutamate (3)
Fumarate (3)
Cytidine (3)
Cysteine (3)
ATP (3)
Aspartate (3)
Asparagine (3)
Arginine (3)
3-phosphoglycerate (3)
2-hydroxyglutarate (3)
Alanine (3)
Glycine (3)
Beta-alanine (3)
Spermidine (3)
CMP (3)
Tryptamine (3)
Indole (3)

First Public Date

2025 (3)
2020 (3)
2026 (2)
2024 (1)
2023 (1)
2021 (1)
2019 (1)
2017 (1)

Modelling Approach

Ordinary differential equation model (21)
Constraint-based model (1)

Lab affiliation

The Wilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland 21287 USA (7)
Department of Chemistry, Imperial College London, Molecular Sciences Research Hub, London, W12 0BZ, UK The Francis Crick Institute, London, NW1 1AT, UK (4)
Institute of Bioinformatics , International Technology Park, Bangalore, India (2)
Laboratory of Biomedical Technologies, Agenzia Nazionale per le Nuove Tecnologie, l'Energia e lo Sviluppo Economico Sostenibile (ENEA), Rome, Italy (2)
Mayo Clinic (2)
1 - College of Pharmacy, University of Sharjah, Sharjah 2 - Sharjah Institute for Medical Research, University of Sharjah, Sharjah (1)
1 Department of Anaesthesiology, LMU University Hospital, Ludwig-Maximilian-University (LMU), Munich, Germany 2 Walter Brendel Center of Experimental Medicine, Research Unit Immune Function and Immune Metabolism, Ludwig-Maximilian-University (LMU), Munich, Germany (1)
1 The Rosalind Franklin Institute, Oxfordshire, United Kingdom 2 Department of Pharmacology, University of Oxford (1)
1. State Key Laboratory of Genetic Evolution & Animal Models, Key Laboratory of Healthy Aging Research of Yunnan Province, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650201, China 2. University of Chinese Academy of Sciences, Beijing 100101, China 3. KIZ/CUHK Joint Laboratory of Bioresources and Molecular Research in Common Diseases, Kunming 650201, China (1)
1Thoracic and Gastrointestinal Oncology Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA (1)
ATLAS Lab, Turku Centre for Biotechnology, University of Turku and Åbo Akademi, Turku, Finland (1)
Aarhus University (1)
Academic Unit of Reproductive and Developmental Medicine, Department of Oncology and Metabo-lism, The Medical School, University of Sheffield, Sheffield , UK And Department of Pathophysiology, Institute of Biomedicine and Translational Medicine, Faculty of Medi-cine, University of Tartu, 14B Ravila, 50411 Tartu, Estonia and Institute of Veterinary Medicine and Animal Sciences, Estonian University of Life Sciences (1)
Assistant Professor, Biochemistry Boston University School of Medicine Investigator, National Emerging Infectious Diseases Laboratories (NEIDL), USA (1)
Associate Professor, Institute of Advanced Study in Science and Technology (IASST), Guwahati-110035, Assam, India (1)
Augusta University (1)
Babraham Institute, Cambridge, UK (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) School of Life Sciences Technical University of Munich (TUM) Gregor-Mendel-Straße 4 85354 Freising GERMANY (1)
Borch Department of Medicinal Chemistry and Molecular Pharmacology, Purdue University, West Lafayette, Indiana 47907, United States Purdue Institute for Integrative Neuroscience, Purdue University, West Lafayette, Indiana 47907, United States (1)
Bourne Laboratory, Department of Biological Science, Royal Holloway University of London, Egham, Surrey, TW20 OEX, UK (1)
Bristol Myers Squibb (1)
CDSS Bioanalytical Facility, Liverpool Shared Research Facilities, University of Liverpool (1)
CSIR-CCMB (1)
CSIR-Centre for Cellular and Molceular Biology, Hyderabad, India TIGS-Tata Institute for Genetics and Society ,Bengaluru, India (1)
CSIR-Institute of Genomics & Integrative Biology, Mathura Road, Delhi 110025, India. (1)
Center for Metabolic Disease Research (CMDR) Lewis Katz School of Medicine at Temple University Medical Education and Research Building, Room 1060 3500 N. Broad Street Philadelphia, PA 19140, USA (1)
Centre for Targeted Protein Degradation (CeTPD) University of Dundee (1)
Chapman University School of Pharmacy (1)
Chemisrty department Yale University (1)
Chief Scientist, National Institute of Crop Science, Tsukuba, Japan (1)

IsPrivate

False (22)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (73)
RNA-seq of coding RNA (15)
RNA-seq of coding RNA from single cells (8)
ChIP-seq (6)
Unknown experiment type (5)
Transcription profiling by tiling array (5)
Comparative genomic hybridization by array (4)
Methylation profiling by array (4)
Transcription profiling by RT-PCR (3)
ATAC-seq (2)
Other (2)
DNA-seq (2)
Methylation profiling by high throughput sequencing (2)
Human - High-throughput sequencing (1)
Plant - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Proteomic profiling by mass spectrometer (1)
Antigen profiling (1)
RIP-seq (1)
Ribo-seq (1)
Single nucleus RNA sequencing (1)
CUT&RUN (1)

Release Date

2022 (1900)
2023 (1741)
2025 (1655)
2021 (1533)
2024 (1452)
2020 (971)
2019 (647)
2018 (568)
2017 (392)
2016 (357)
2015 (313)
2014 (242)
2026 (220)
2013 (162)
2012 (159)
2011 (142)
2010 (140)
2009 (121)
2008 (41)
2007 (21)
2006 (15)
2005 (11)
2004 (8)
2003 (8)
2002 (6)
2001 (4)
1999 (2)
2000 (1)
1991 (1)

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investigation soil sample from 250 m height of kazem khan mountain at Urmia saline lake

PRJNA686240 | ENA

investigation soil sample from 10 m height of kazem khan mountain at Urmia saline lake

PRJNA686232 | ENA

Wellness Services: A Need Assessment Survey for Post Graduate Medical Education Trainees at Aga Khan University Hospital, Pakistan.

Not available

S-EPMC8368754 | biostudies-literature

Adapting the FAST-M maternal sepsis intervention for implementation in Pakistan: a qualitative exploratory study

Not available

S-EPMC9472171 | biostudies-literature

Transcriptional reprogramming of tumor-associated endothelial cells by disruption of TNF-M-NM-1 signaling

Endothelial inflammation contributes to the pathogenesis of numerous human diseases; however, the role of tumor endothelial inflammation in the growth of experimental tumors and its influence on the prognosis of human cancers is less understood. TNF-M-NM-1, an important mediator of tumor stromal inf...

ORGANISM(S): Mus musculus

2012-10-20 | E-GEOD-33253 | biostudies-arrayexpress

investigation soil sample from 150 m height of kazem khan mountain at Urmia saline lake

PRJNA686237 | ENA

Synthesis of M-Ag₃PO₄, (M = Se, Ag, Ta) Nanoparticles and Their Antibacterial and Cytotoxicity Study.

Not available

S-EPMC9569642 | biostudies-literature

Patterns of suicide and self-harm in Pakistan: a retrospective descriptive study protocol.

Not available

S-EPMC9710352 | biostudies-literature

From medical school to global health leadership: 35-year career outcomes and gender disparities from the Aga Khan University Medical College.

Not available

S-EPMC12261767 | biostudies-literature

Mouse Interferon M-NM-1, M-NM-2 RTM-BM-2 Profiler PCR

Infection of mouse bone marrow Flts3L-derived dendritic cells (FL-DCs) with chimeric human T cell leukemia virus type 1 (HTLV-1) results in the upregulation as well as selective downregulation of various interferon-stimulated genes. Mouse bone marrow Flt3L-derived dendritic cells were infected with ...

ORGANISM(S): Mus musculus

2010-10-28 | E-GEOD-24957 | biostudies-arrayexpress

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13062 Results

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