Kilian A A - OmicsDI

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Transcriptomics (38)
Proteomics (22)
Genomics (8)
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Andropogon gerardi (19)
Bacteria (19)
Canis lupus familiaris (19)
Cnidaria (19)
Cricetulus griseus (19)
Eukaryota (19)
Fasciola (19)
Hepatitis B virus (19)
Human betaherpesvirus 5 (19)
Madurella mycetomatis (19)
Mesocricetus auratus (19)
Miscanthus x giganteus (19)
Mus musculus (19)
Mycobacterium tuberculosis (19)
Orthoflavivirus (19)
Panicum virgatum (19)
Platyhelminthes (19)
Pseudomonas aeruginosa AES-1R (19)
Arabidopsis thaliana (17)
Homo sapiens (10)
Streptococcus gordonii str. Challis (2)
Hordeum vulgare (2)
Mus musculus (2)
Mammalia (1)
Streptococcus gordonii (1)
Fusobacterium nucleatum (1)
Haemophilus influenzae (1)
Aggregatibacter actinomycetemcomitans (1)
Candida albicans (1)
Streptococcus gordonii str. Challis substr. CH1 (1)

Organisms

Arabidopsis thaliana (5)
mine drainage metagenome (1)

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biostudies-arrayexpress (33)
pride (19)
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Disease

Inflammatory bowel disease (1)
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Technology Type

Mass Spectrometry (19)
Shotgun proteomics (7)
Bottom-up proteomics (6)
SWATH MS (5)
Mass spectrometry (4)
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NMR spectroscopy (2)
Affinity proteomics (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Immunopeptidomics (1)

Instrument Platform

Illumina NovaSeq 6000 (4)
Nuclear Magnetic Resonance (NMR) - (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
LTQ Orbitrap Velos (1)
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CHEBI ID

CHEBI:32816 (3)
CHEBI:48430 (3)
CHEBI:15366 (2)
CHEBI:30751 (2)
CHEBI:15347 (2)
CHEBI:16236 (2)
CHEBI:30768 (2)
CHEBI:30772 (2)
CHEBI:78320 (2)
CHEBI:16449 (2)
CHEBI:15741 (2)
CHEBI:63836 (1)
CHEBI:135967 (1)
CHEBI:31586 (1)
CHEBI:70476 (1)
CHEBI:179180 (1)
CHEBI:182534 (1)
CHEBI:176158 (1)
CHEBI:169173 (1)
CHEBI:52445 (1)
CHEBI:83405 (1)
CHEBI:187525 (1)
CHEBI:137729 (1)
CHEBI:73378 (1)
CHEBI:77507 (1)
CHEBI:191443 (1)
CHEBI:6591 (1)
CHEBI:169260 (1)
CHEBI:52169 (1)
CHEBI:36298 (1)

Metabolite Name

N-methylethanolamine phosphate (3)
2-Methyl-5-nitroimidazol-1-ylacetic acid (2)
Dodecafluoropentane (2)
N-Acetyl-D-glucosaminyldiphosphodolichol (2)
L-lysyl-l-lysyl-l-lysine (2)
L-3-Amino-2-(oxalylamino)propanoic acid (2)
M-Trigallic acid (2)
Phosphocysteamine (2)
Alpha-Fluoro-beta-ureidopropionic acid (2)
Iodinated glycerol (2)
5-Amino-6-(5'-phosphoribitylamino)uracil (2)
Aminodeoxykanamycin (2)
7-Hexadecenoic acid, methyl ester (2)
N-(1-Deoxy-1-fructosyl)serine (2)
Ximoprofen (2)
Arsenocholine (2)
Sesaminol glucoside (2)
Phthalamic acid (2)
3-Sulfopyruvic acid (2)
Sodium citrate (2)
RHODAMINE 6G (2)
Alpha-linolenyl carnitine (2)
Polidocanol (2)
SM(d16:1/17:0) (2)
Inosine 2',3'-cyclic phosphate (2)
2-Amino-3,4-dihydroxypentanedioic acid (2)
Histidylhistidine (2)
Phosphodimethylethanolamine (2)
N-(1-Deoxy-1-fructosyl)methionine (2)
Phenylalanyltryptophan (2)

IsPrivate

False (2)

First Public Date

2014 (5)
2025 (2)
2020 (1)

Modelling Approach

Ordinary differential equation model (2)

Study type

Transcription profiling by array (26)
RNA-seq of coding RNA (4)
Unknown experiment type (1)
Comparative genomic hybridization by array (1)
Single nucleus RNA sequencing (1)

Release Date

2022 (55)
2025 (50)
2021 (48)
2020 (42)
2023 (40)
2019 (40)
2018 (29)
2024 (27)
2014 (24)
2012 (21)
2008 (18)
2016 (16)
2015 (15)
2013 (15)
2017 (15)
2026 (11)
2010 (11)
2011 (9)
2009 (7)
2002 (4)
2005 (3)
2007 (2)
2003 (2)
2001 (2)
2006 (1)
2004 (1)
2000 (1)
1999 (1)
1998 (1)

Lab affiliation

Institute of Molecular Systems Biology, ETH Zurich (3)
Broad Institute (1)
Centre for Medicines Discovery & Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Oxford, UK (1)
Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Old Road Campus, Roosevelt Drive, Oxford, UK. Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Old Road Campus, Roosevelt Drive, Oxford, UK. (1)
Centre for Medicines Discovery, Nuffield Department of Medicine; Oxford OX3 7BN, UK. Target Discovery Institute, Nuffield Department of Medicine; Oxford OX3 7BN, UK. (1)
Centre for medicines discovery, University of Oxford (1)
Charite- Universitaetsmedizin Berlin, 10117 Berlin, Germany (1)
Charité Universitätsmedizin, Department of Biochemistry, 10117 Berlin, Germany The Wellcome Centre for Human Genetics, Nuffield Department of Medicine, University of Oxford, Oxford OX3 7BN, UK Max Planck Institute for Molecular Genetics, Berlin, Germany (1)
Core Facility for Mass Spectrometry and Proteomics, Center for Molecular Biology of Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany (1)
Max Delbrück Center for Molecular Medicine in the Helmholtz Association (1)
Nuffield Department of Medicine (1)
School of Biomedical Sciences, Faculty of Medicine and Health, UNSW Sydney, Sydney, NSW, 2052, Australia (1)
Section/Core Facility Mass Spectrometry and Proteomics, Center for Diagnostics, University Medical Center Hamburg−Eppendorf (UKE), Hamburg, Germany (1)
Structural Genomics Consortium (SGC), Chemical biology Group, University of Oxford, United Kingdom. also affiliated with: Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, United Kingdom. (1)
Structural Genomics Consortium, Nuffield Department of Clinical Medicine, University of Oxford, UK Target Discovery Institute, Nuffield Department of Clinical Medicine, University of Oxford, UK (1)
Structural Genomics Consortium, University of Oxford, OX3 7DQ, Oxford, UK (1)
Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Oxford, OX3 7FZ, UK Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford OX3 7FZ, UK (1)

Tags

xref:PubMed:17376166 (5)
xref:EuropePMC:PMC7862954 (1)

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The complete mitochondrial genome of a Chinese endemic species, Paraprenanthes diversifolia (Vaniot) N. Kilian (Cichorieae; Asteraceae).

Not available

S-EPMC7748815 | biostudies-literature

Exploring the approaches of non-Indigenous researchers to Indigenous research: a qualitative study.

Not available

S-EPMC6715113 | biostudies-literature

Two new mountainous species of Lactuca (Cichorieae, Asteraceae) from Iran, one presenting a new, possibly myrmecochorous achene variant.

Not available

S-EPMC3332035 | biostudies-literature

RNAseq of dark dissected, 3 day old Arabidopsis (col0) seedlings, including cotyledons, apical hooks and hypocotyls

Seedling establishment is a critical developmental transition that contributes to survival in the local environment. While light is the primary cue driving de-etiolation, how abiotic stress shapes early development in darkness remains unclear. We show that salinity induces a photomorphogenic-like re...

ORGANISM(S): Arabidopsis thaliana

2026-06-23 | E-MTAB-16552 | biostudies-arrayexpress

Regulation of gene expression in Streptococcus gordonii by coaggregation with Actinomyces naeslundii

Oral streptococci, including Streptococcus gordonii, and Actinomyces naeslundii, are consistently found to be the most abundant bacteria in the early stages of dental plaque accumulation. These organisms interact physically (coaggregate) in vitro and in vivo. We hypothesized that coaggregation betwe...

ORGANISM(S): Streptococcus gordonii str. Challis

2008-06-02 | E-GEOD-9478 | biostudies-arrayexpress

Identification of Virulence-Associated Properties by Comparative Genome Analysis of Streptococcus pneumoniae, S. pseudopneumoniae, S. mitis, Three S. oralis Subspecies, and S. infantis.

Not available

S-EPMC6722419 | biostudies-literature

Kilian2024 - Immune cell dynamics in Cue-Induced Extended Human Colitis Model

Kilian2024 - Immune cell dynamics in Cue-Induced Extended Human Colitis Model Single-cell technologies such as scRNA-seq and flow cytometry provide critical insights into immune cell behavior in inflammatory bowel disease (IBD). However, integrating these datasets into computational models for dyn...

2025-03-07 | MODEL2502180001 | BioModels

Transcription profiling of Arabidopsis treated with osmotic stress - AtGenExpress

AtGenExpress: A multinational coordinated effort to uncover the transcriptome of the multicellular model organism Arabidopsis thaliana. The activity of genes and their encoded products can be regulated in several ways, but transcription is the primary level, since all other modes of regulation (RNA ...

ORGANISM(S): Arabidopsis thaliana

2008-06-13 | E-GEOD-5622 | biostudies-arrayexpress

Transcriptional landscape of transkingdom communication between Candida albicans and Streptococcus gordonii

Recent studies have shown that the transcriptional landscape of the pleiomorphic fungus Candida albicans is highly dependent upon growth conditions. Here using a dual RNA-seq approach we identified 299 C. albicans and 72 Streptococcus gordonii genes that were either up- or down-regulated specificall...

ORGANISM(S): Candida albicans

2015-06-22 | E-GEOD-68477 | biostudies-arrayexpress

Transcription profiling of Arabidopsis response to drought stress - AtGenExpress

ORGANISM(S): Arabidopsis thaliana

2008-06-13 | E-GEOD-5624 | biostudies-arrayexpress

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