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TranscriptomicsChromatin immunoprecipitation of C. elegans intestine
For each experiment (as described in Pauli et al. 2006): Channel 1: whole worm lysate from strain SD1084 carrying transgene Pges-1::FLAG::PAB-1 Channel 2: mRNA immunoprecipitated from strain SD1084 carrying transgene Pges-1::FLAG::PAB-1 mRNA was amplified and hybridized to C. elegans DNA arrays fro...
ORGANISM(S): Caenorhabditis elegans 
2006-01-04 | E-SMDB-3592 | biostudies-arrayexpress
TranscriptomicsMOTS-c: A Novel Peptide Encoded by a Short Mitochondrial Open Reading Frame Regulates Metabolic Homeostasis
Mitochondria are known to be functional organelles, but their role as a signaling unit is increasingly being appreciated. The recent identification of a short open reading frame (sORF) in the mitochondrial DNA (mtDNA) that encodes a signaling peptide, humanin, suggests the possible existence of addi...
ORGANISM(S): Homo sapiens 
2015-03-07 | E-GEOD-65068 | biostudies-arrayexpress
ProteomicsLabel free DIA proteomic analysis of thoracic lymph from cigarette smoke (CS)-exposed mice
The lymphatic vasculature is critical for lung function, but defects in lymphatic functionin the pathogenesis of lung disease is understudied. To further assess the contribution of lymphatics to the pathogenesis of lung emphysema we used a mouse model of cigarette smoke (CS)-induced emphysema, and a...
ORGANISM(S): Mus musculus (Mouse) 
2022-05-10 | PXD031413 | Pride
Label free proteomics  dia proteomics and peptidomics of mouse lymph  dda spectral libraries 
TranscriptomicsmRNA tagging (intestine)
For each experiment (as described in Pauli et al. 2006): Channel 1: whole worm lysate from strain SD1084 carrying transgene Pges-1::FLAG::PAB-1 Channel 2: mRNA immunoprecipitated from strain SD1084 carrying transgene Pges-1::FLAG::PAB-1 mRNA was amplified and hybridized to C. elegans DNA arrays fro...
ORGANISM(S): Caenorhabditis elegans 
2006-02-02 | E-GEOD-4150 | biostudies-arrayexpress
GenomicsLocal DNA hypomethylation activates genes in rice endosperm
Cytosine methylation silences transposable elements in plants, vertebrates and fungi, but also regulates gene expression1. Plant methylation is catalyzed by three families of enzymes, each with a preferred sequence context: CG, CHG (H = A, C or T) and CHH, with CHH methylation targeted by the RNA in...
ORGANISM(S): Oryza sativa 
2010-11-01 | E-GEOD-22591 | biostudies-arrayexpress
TranscriptomicsIntestine mRNA tagging
mRNA tagging in the intestine of C. elegans. FLAG::PAB-1 was expressed from the intestine-specific promoter for ges-1 and used to immunoprecipitate FLAG::PAB-1/mRNA complexes from the intestine with anti-FLAG antibody on agarose beads. This mRNA was amplified, cDNA was synthesized and labeled with...
ORGANISM(S): Caenorhabditis elegans 
2010-06-05 | E-GEOD-2626 | biostudies-arrayexpress
UnknownCS-Symmetric Pyridine(diimine) Iron Methyl Complexes for Catalytic [2+2] Cycloaddition and Hydrovinylation: Metallacycle Geometry Determines Selectivity.
Not available
S-EPMC10369671 | biostudies-literature
TranscriptomicsGenomic comparison of Salmonella enterica serovars and Salmonella bongori
This experiment set includes 64 arrays representing 26 serovars and strains of Salmonella spp. including many representatives of subspecies I, Arizona from subsp. IIIa, and S. bongori from subsp. V. The genomic DNA from all strains were labeled with Cy5 and hybridized against an equal amount (1.5 u...
ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium 
2005-11-03 | E-GEOD-3564 | biostudies-arrayexpress
GenomicsDNA Cytosine Hydroxymethylation Levels Are Distinct Among Peripheral Blood Leukocytes
Peripheral blood leukocytes are the most commonly used surrogates to study epigenome-induced risk and epigenomic response to disease related stress. We considered the hypothesis that the TET enzyme catalyzed hydroxymethylation of 5mC to 5hmC might vary among peripheral blood leukocytes and reflect t...
ORGANISM(S): Homo sapiens 
2016-07-05 | E-GEOD-70519 | biostudies-arrayexpress
UnknownFunction and molecular regulation of DWARF1 as a C-24 reductase in brassinosteroid biosynthesis in Arabidopsis.
Not available
S-EPMC6018864 | biostudies-literature
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