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UnknownEffects of Physical Activity on Neurophysiological and Gene Expression Profiles in Chronic Back Pain: Study Protocol.
Not available
S-EPMC8935666 | biostudies-literature
MetabolomicsSPE-IMS-MS: An automated platform for sub-sixty second surveillance of endogenous metabolites and xenobiotics in biofluids
Characterization of endogenous metabolites and xenobiotics is essential to deconvoluting the genetic and environmental causes of disease. However, surveillance of chemical exposure and disease-related changes in large cohorts requires an analytical platform that offers rapid measurement, high sensit...
2017-02-14 | MTBLS427 | MetaboLights
ProteomicsElemental allocation to molecular drivers of biogeochemistry in the Southern Ocean
We conducted two iron-temperature bioassay incubation experiments during the austral summer of 2018-2019 in the Weddell Sea, Southern Ocean. The first bioassay (BA1) was initiated on December 28th, 2018, approximately 560 km away from the ice edge at 65°S 0.038°E. The second bioassay (BA2) was initi...
ORGANISM(S): marine plankton environmental sample 
2026-06-24 | PXD042627 | Pride
Southern ocean Trace metals Diatoms Temperature Phytoplankton Iron Phaeocystis Metaproteomics Elemental stoichiometry 
UnknownMolecular Mechanism of Condensin I Activation by KIF4A
Not available
S-SCDT-10_1038-S44318-024-00340-W | biostudies-other
ProteomicsRoss Sea Surface Water Metaproteomics
We sampled the microbial community at the sea ice edge in McMurdo Sound, Ross Sea at the same location (-77.62S, 165.41E) for four weeks (as described in Wu et al 2019, Nat. Comms.). We had four sampling dates corresponding to weeks 1 to 4: December 28 2014, January 6, 15, and 22 2015. Large volumes...
ORGANISM(S): marine plankton environmental sample 
2021-09-07 | PXD022995 | Pride
Phytoplankton 
TranscriptomicsDefining the Roles and Regulation of the GATA-factor ELT-2 in the C. elegans Endoderm
We identified genome-wide sites of occupancy for the intestine-specific transcription factor ELT-2 in L3-staged N2 worm by performing ELT-2 ChIP-seq on whole worms; we performed RNA-seq on L3-staged N2 whole worms To identify DNA regions of direct ELT-2 occupancy, we performed the following ChIP-seq...
ORGANISM(S): Caenorhabditis elegans 
2016-03-30 | E-GEOD-71720 | biostudies-arrayexpress
TranscriptomicsFoxO1 Controls Effector to Memory Transition and Maintenance of Functional CD8 T-Cell Memory
During a T cell response, naïve CD8 T cells differentiate into effector cells. Subsequently, a subset of effector cells termed memory precursor effector cells (MPECs) further differentiates into functionally mature memory CD8 T cells. The transcriptional network underlying this carefully scripted p...
ORGANISM(S): Mus musculus 
2013-06-25 | E-GEOD-45673 | biostudies-arrayexpress
GenomicsData Access Committee for COLO829 Somatic reference standard for cancer genome sequencing
Data Access Committee EGAC00001000408
EGAC00001000408 | EGA
GenomicsDATA-291 - samples
This paper describes the work by Akbari V,. et al. on detection of allele specific methylation using oxford nanopore sequencing data. They have developed set of tools, SNVoter and NanoMethPhase, and workflow which enable the detection of allele specific methylation even in samples with sparse covera...
EGAD00001007920 | EGA
ProteomicsPeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements
Global proteomics datasets to study ash utilization by R. toruloides. PeakDecoder is a workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. It is available at https://github.com/EMSL-Computing/PeakDecoder
ORGANISM(S): Rhodosporidium Toruloides Np11 (ncbitaxon:1130832) 
2023-02-03 | MSV000091202 | MassIVE
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