Kim Sam S - OmicsDI

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Unknown (178)
Transcriptomics (94)
Proteomics (22)
Genomics (7)
Metabolomics (4)

Organisms

Homo sapiens (49)
Mus musculus (22)
Arabidopsis thaliana (5)
Saccharomyces cerevisiae (3)
Drosophila melanogaster (3)
Danio rerio (3)
Streptomyces avermitilis (2)
Zea mays (2)
Arabidopsis (1)
Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2 (1)
Daphnia magna (1)
Oryza sativa Indica Group (1)
Aspergillus fumigatus (1)
Streptomyces venezuelae (1)
Staphylococcus aureus (1)
Mesocricetus auratus (1)
Caenorhabditis elegans (1)
Pseudomonas aeruginosa (1)
Escherichia coli (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Rattus norvegicus (1)
Sus scrofa (1)
Fusarium sinicum (1)
Leishmania amazonensis (1)
Leishmania infantum (1)
Leishmania mexicana (1)
Oncorhynchus kisutch (1)

Repository

biostudies-arrayexpress (96)
PAXDB (16)
EGA (5)
pride (5)
MetaboLights (4)
MassIVE (1)

Tissue

Epithelial cell (2)
Cell culture (1)
Skeletal muscle fiber (1)

Disease

HPV positive (1)
Schizophrenia (1)
Leishmaniasis (1)

Technology Type

Mass Spectrometry (5)
Mass spectrometry (3)
Shotgun proteomics (3)
Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Bottom-up proteomics (1)

Instrument Platform

Illumina HiSeq 2500 (2)
Qiagen RNAeasy, Bioanalyzer QubitFluorometer, Agilent 2100, RNA Pico 6000 chip (1)
DNBSEQ-G400 (1)
NextSeq 550 (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
LTQ Orbitrap Velos ETD (1)
Direct infusion MS - (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Q Exactive (1)
QTRAP 5500 (Applied Biosystems) (1)
QTRAP 6500 (Applied Biosystems) (1)

Publication Date

2014 (26)
2010 (19)
2011 (14)
2013 (10)
2015 (9)
2012 (8)
2016 (6)
2008 (6)
2018 (4)
2026 (3)
2009 (3)
2024 (2)
2022 (2)
2021 (2)
2007 (2)
2019 (1)
2005 (1)
2003 (1)
2017 (1)
2025 (1)
2020 (1)

UNIPROT ID/AC

143BA_DANRE (15)
143BB_DANRE (15)
143G1_DANRE (15)
7955.ENSDARP00000023429 (15)
7955.ENSDARP00000067603 (15)
7955.ENSDARP00000067945 (15)
7955.ENSDARP00000082327 (15)
7955.ENSDARP00000093747 (15)
7955.ENSDARP00000093780 (15)
7955.ENSDARP00000093791 (15)
7955.ENSDARP00000093801 (15)
7955.ENSDARP00000096295 (15)
7955.ENSDARP00000096352 (15)
7955.ENSDARP00000098342 (15)
7955.ENSDARP00000098726 (15)
7955.ENSDARP00000099550 (15)
7955.ENSDARP00000100434 (15)
7955.ENSDARP00000101311 (15)
7955.ENSDARP00000101467 (15)
7955.ENSDARP00000101525 (15)
7955.ENSDARP00000101862 (15)
7955.ENSDARP00000102682 (15)
7955.ENSDARP00000102749 (15)
7955.ENSDARP00000102775 (15)
7955.ENSDARP00000103208 (15)
7955.ENSDARP00000103318 (15)
7955.ENSDARP00000103819 (15)
7955.ENSDARP00000104168 (15)
7955.ENSDARP00000104379 (15)
7955.ENSDARP00000104630 (15)

CHEBI ID

CHEBI:19138 (3)
CHEBI:64017 (3)
CHEBI:73001 (3)
CHEBI:74000 (3)
CHEBI:78646 (3)
CHEBI:78647 (3)
CHEBI:84563 (3)
CHEBI:15551 (2)
CHEBI:15843 (2)
CHEBI:16566 (2)
CHEBI:28125 (2)
CHEBI:28158 (2)
CHEBI:28364 (2)
CHEBI:28728 (2)
CHEBI:3663 (2)
CHEBI:41509 (2)
CHEBI:46898 (2)
CHEBI:52333 (2)
CHEBI:52961 (2)
CHEBI:63966 (2)
CHEBI:63969 (2)
CHEBI:63974 (2)
CHEBI:64485 (2)
CHEBI:64486 (2)
CHEBI:64487 (2)
CHEBI:64549 (2)
CHEBI:64560 (2)
CHEBI:64561 (2)
CHEBI:64563 (2)
CHEBI:64566 (2)

Metabolite Name

(R)-3-hydroxybutyrylcarnitine (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPC (P-16:0/20:4)* (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4)* (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPC (P-16:0/18:2)* (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2)* (1)
1-(1-enyl-palmitoyl)-2-palmitoleoyl-GPC (P-16:0/16:1)* (1)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0)* (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0)* (1)
1-(1-enyl-stearoyl)-GPE (P-18:0)* (1)
1-arachidonoyl-GPI (20:4)* (1)
1-lignoceroyl-GPC (24:0) (1)
1-linoleoyl-GPE (18:2)* (1)
1-linoleoyl-GPI (18:2)* (1)
1-methyl-4-imidazoleacetate (1)
1-methylguanidine (1)
1-methylhistidine (1)
1-methylnicotinamide (1)
1-myristoyl-2-palmitoyl-GPC (14:0/16:0) (1)
1-oleoyl-2-docosahexaenoyl-GPC (18:1/22:6)* (1)
1-oleoyl-2-linoleoyl-GPE (18:1/18:2)* (1)
1-oleoyl-GPI (18:1) (1)
1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4)* (1)
1-palmitoyl-2-arachidonoyl-GPI (16:0/20:4)* (1)
1-palmitoyl-2-docosahexaenoyl-GPC (16:0/22:6) (1)
1-palmitoyl-2-docosahexaenoyl-GPE (16:0/22:6)* (1)
1-palmitoyl-2-linoleoyl-GPE (16:0/18:2) (1)
1-palmitoyl-2-oleoyl-GPC (16:0/18:1) (1)
1-palmitoyl-2-oleoyl-GPI (16:0/18:1)* (1)
1-palmitoyl-2-palmitoleoyl-GPC (16:0/16:1)* (1)
1-palmitoyl-2-stearoyl-GPC (16:0/18:0) (1)

Study type

Transcription profiling by array (55)
RNA-seq of coding RNA (15)
RNA-seq of non coding RNA (6)
Unknown experiment type (4)
ChIP-chip by tiling array (3)
Other (2)
Methylation profiling by array (2)
RNA-seq of total RNA (2)
Transcription profiling by SAGE (1)
High-throughput sequencing (1)
Human - One-color microarray (1)
Transcription profiling by RT-PCR (1)
Comparative genomic hybridization by array (1)
ChIP-seq (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (26)
2020 (26)
2024 (20)
2021 (20)
2010 (20)
2025 (18)
2014 (17)
2013 (17)
2011 (16)
2016 (14)
2023 (14)
2015 (12)
2019 (11)
2012 (10)
2018 (6)
2008 (6)
2026 (5)
2017 (5)
2009 (4)
2007 (2)
2003 (2)
2005 (1)
2002 (1)
2001 (1)

Lab affiliation

Department of Chemistry, University of Michigan, Ann Arbor, MI 48109 Department of Biological Chemistry, University of Michigan, Ann Arbor, MI 48109 (1)
Department of Molecular Medicine and Biopharmaceutical Sciences, Graduate School of Convergence Science and Technology and College of Medicine or College of Pharmacy, Seoul National University, Republic of Korea (1)
Institute for Basic Science and Seoul National University (1)
Mercer University School of Medicine, Department of Medical Sciences (1)
School of Biological Sciences University of Aberdeen United Kingdom (1)

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Structure-guided discovery of the metabolite carboxy-SAM that modulates tRNA function.

Not available

S-EPMC3895326 | biostudies-literature

The impact of a ligand binding on strand migration in the SAM-I riboswitch.

Not available

S-EPMC3656099 | biostudies-literature

Depletion of SAM leading to loss of heterochromatin drives muscle stem cell ageing.

Not available

S-EPMC10976122 | biostudies-literature

Native interface of the SAM domain polymer of TEL.

Not available

S-EPMC126206 | biostudies-literature

Polymerization of the SAM domain of TEL in leukemogenesis and transcriptional repression.

Not available

S-EPMC149168 | biostudies-literature

Inhibitors that block initiation of wall teichoic acid biosynthesis sensitize methicillin-resistant Staphylococcus aureus to beta-lactams

Methicillin resistance in Staphylococcus aureus depends on the production of mecA, which encodes penicillin-binding protein 2A (PBP2A), an acquired peptidoglycan transpeptidase with reduced susceptibility to beta-lactam antibiotics. Here, we show that preventing the expression of wall teichoic acids...

ORGANISM(S): Staphylococcus aureus

2010-10-19 | E-GEOD-24439 | biostudies-arrayexpress

GenK-catalyzed C-6' methylation in the biosynthesis of gentamicin: isolation and characterization of a cobalamin-dependent radical SAM enzyme.

Not available

S-EPMC3796153 | biostudies-literature

Expression analysis of Streptomyces avermitilis NRRL8165 delta-aveI mutant

Investigation of whole genome gene expression level changes in Streptomyces avermitilis delta-aveI mutant, compared to the wild-type strain. The mutants analyzed in this study are further described in Chen L, Lu Y., Chen J, Zhang W, Shu D, Qin Z, Yang S, Jiang W. (2008) Characterization of a negativ...

ORGANISM(S): Streptomyces avermitilis

2010-05-16 | E-GEOD-16892 | biostudies-arrayexpress

Characterization by ENDOR Spectroscopy of the Iron-Alkyl Bond in a Synthetic Counterpart of Organometallic Intermediates in Radical SAM Enzymes.

Not available

S-EPMC9529902 | biostudies-literature

Accumulation of S-adenosyl-L-methionine enhances production of actinorhodin but inhibits sporulation in Streptomyces lividans TK23.

Not available

S-EPMC145313 | biostudies-literature