Kim Semi S - OmicsDI

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Unknown (247)
Proteomics (44)
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Genomics (1)

Organisms

Homo sapiens (24)
Mus musculus (16)
Arabidopsis thaliana (4)
Bacillus amyloliquefaciens (2)
Salmo salar (2)
Escherichia coli (2)
Phaeodactylum tricornutum (1)
Mycobacterium tuberculosis H37Rv (1)
Sus scrofa (1)
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Cupiennius salei (1)
Oryza sativa Japonica Group (1)
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Saccharomyces cerevisiae (1)
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Zea mays (1)

Organisms

Mus musculus (1)

Repository

pride (43)
biostudies-arrayexpress (14)
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MassIVE (1)
ENA (1)

Tissue

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Disease

Brain cancer (1)
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Stomach cancer (1)
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Wild-type amyloidosis (1)
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Technology Type

Mass Spectrometry (43)
Shotgun proteomics (25)
Bottom-up proteomics (7)
Top-down proteomics (6)
Affinity purification coupled with mass spectrometry proteomics (5)
Data-dependent acquisition (4)
Gel-based experiment (3)
Mass spectrometry (2)
Mass spectrometry assay (1)

Instrument Platform

Illumina NovaSeq 6000 (2)
NextSeq 500 (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina HiSeq 2500 (1)
LTQ Velos ETD (1)
Exactive (Thermo Scientific) (1)

Publication Date

2026 (8)
2021 (6)
2019 (6)
2025 (6)
2018 (6)
2020 (5)
2024 (4)
2016 (4)
2023 (4)
2015 (3)
2013 (3)
2022 (3)
2011 (2)
2008 (2)
2010 (1)

CHEBI ID

CHEBI:10017 (1)
CHEBI:10018 (1)
CHEBI:10136 (1)
CHEBI:10329 (1)
CHEBI:10565 (1)
CHEBI:10586 (1)
CHEBI:11060 (1)
CHEBI:1157 (1)
CHEBI:116314 (1)
CHEBI:11946 (1)
CHEBI:1237 (1)
CHEBI:132188 (1)
CHEBI:136687 (1)
CHEBI:136940 (1)
CHEBI:137162 (1)
CHEBI:1372 (1)
CHEBI:1391 (1)
CHEBI:1427 (1)
CHEBI:1438 (1)
CHEBI:15336 (1)
CHEBI:15354 (1)
CHEBI:15420 (1)
CHEBI:15424 (1)
CHEBI:15425 (1)
CHEBI:15426 (1)
CHEBI:15428 (1)
CHEBI:15436 (1)
CHEBI:15551 (1)
CHEBI:15603 (1)
CHEBI:15614 (1)

Metabolite Name

(2S)-2-Isopropylmalate (1)
(L-Seryl)adenylate (1)
(R)-2,3-Dihydroxy-3-methylbutanoate (1)
(R)-3-Hydroxybutanoate (1)
(R)-Malate (1)
(S)-1-Pyrroline-5-carboxylate (1)
(S)-2-Acetolactate (1)
(S)-3-Methyl-2-oxopentanoic acid (1)
(S)-Malate (1)
1,3-benzenedisulfonate (1)
1-O-Methyl-myo-inositol (1)
1-Salicylateglucuronide (1)
10-Formyltetrahydrofolate (1)
10-Hydroxydecanoic acid (1)
12-Hydroxydodecanoic acid (1)
16-hydroxypalmitate (1)
18-nonadecynoic acid (1)
2'-Norberbamunine (1)
2(alpha-D-Mannosyl)-D-glycerate (1)
2,5-Dioxopentanoate (1)
2,6-Dichloro-4'-biphenylol (1)
2,7-Anhydro-alpha-N-acetylneuraminic acid (1)
2-(2'-methylthio)ethylmalic-acid (1)
2-(Acetamidomethylene)succinate (1)
2-(Hydroxymethyl)-3-(acetamidomethylene)succinate (1)
2-(alpha-D-Galactosyl)-sn-glycerol 3-phosphate (1)
2-(sulfomethyl)thiazolidine-4-carboxylate (1)
2-Acetolactate (1)
2-C-Methyl-D-erythritol 4-phosphate (1)
2-Dehydro-3-deoxy-L-rhamnonate (1)

First Public Date

2013 (1)

Modelling Approach

Constraint-based model (1)
Ordinary differential equation model (1)

Lab affiliation

IBS, KAIST (4)
Department of Chemistry, Korea University (3)
Professor and Tier 1 Canada Research Chair in Proteinase Proteomics and Systems Biology at the University of British Columbia, Centre for Blood Research (3)
Department of Biological Sciences, Seoul National University, Seoul, Republic of Korea (2)
1 Department of Genetics, Harvard Medical School, Boston, MA 02115 (1)
1. Department of Chemistry, Korea University, Seoul 02841, Republic of Korea 2. Center for Proteogenome Research, Korea University, Seoul 02841, Republic of Korea (1)
1Department of Physiology and Pharmacology, Cumming School of Medicine, University of Calgary, Calgary, Alberta, Canada 2 Snyder Institute for Chronic Diseases, Hotchkiss Brain Institute and McCaig Institute for Bone and Joint Health, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada (1)
Antwerp University Faculty of Pharmaceutical, Biomedical and Veterinary Sciences Protein Chemistry, Proteomics and Epigenetic Signalling - PPES VITO, Unit Environmental Risk and Health (1)
Applied Bioinformatics, Department for Computer Science, University of Tuebingen, Sand 14, 72076 Tuebingen,Germany (1)
Asan Institute for Life Sciences, Asan Medical Center, University of Ulsan College of Medicine, Seoul, South Korea; Department of Digital Medicine, Asan Medical Center, University of Ulsan College of Medicine, Seoul, South Korea. (1)
Assistant professor, School of Biological Sciences, Seoul National University (1)
BMBB, University of Minnesota, USA (1)
Bertis R&D Division, Bertis Inc., Republic of Korea (1)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria (1)
Center for Plant Aging Research, Institute for Basic Science, Daegu Gyeongbuk Institute of Science and Technology (DGIST), Daegu, Republic of Korea (1)
Center for Plant Aging Research, Institute for Basic Science, and Department of New Biology, Daegu Gyeongbuk Institute of Science and Technology, Daegu 42988, Republic of Korea (1)
Center for Theragnosis, KIST, Seongbuk-gu, SEOUL, REP of KOREA (1)
Center for Theragnosis, Korea Institute of Science and Technology, Seoul, Korea (1)
Department of Chemical Physiology and Biochemistry Oregon Health and Science University Portland, OR 97239 USA (1)
Department of Chemistry, Vanderbilt University (1)
Department of Medical Informatics and Statistics, BK21 Project, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (1)
Department of Microbiology, Asan Medical Institute of Convergence Science and Technology, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Republic of Korea (1)
Department of Molecular Medicine and Biopharmaceutical Sciences, Graduate School of Convergence Science and Technology and College of Medicine or College of Pharmacy, Seoul National University, Republic of Korea. (1)
Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium VIB-UGent Center for Plant Systems Biology, VIB, 9052 Ghent, Belgium (1)
IBS (Institute for Basic Science, Korea), KAIST (Korea Advanced Institute of Science & Technology) (1)
Institute of Ecology and Evolution, University of Bern, Baltzerstrasse 6, CH-3012 Bern, Switzerland (1)
Laboratory of Neural Development and Regeneration, CIBIO Department - University of Trento Via Sommarive 9, 38123 Trento, ITALY Centre for Medical Sciences - CISMed University of Trento Via S. Maria Maddalena 1, 38122 Trento, Italy (1)
Plant Science, University of Cambridge, UK (1)
Principal Investigator and Associate Director – VIB-UGent Center for Medical Biotechnology, Belgium Head of Department – UGent Department of Biomolecular Medicine, Belgium (1)
Public Health Research Institute, Rutgers University (1)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

Submitter Keywords

Immuno-oncology (1)

Study type

Transcription profiling by array (8)
RNA-seq of coding RNA (2)
Cell line - Single-cell sequencing (1)
Plant - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Comparative genomic hybridization by array (1)

Release Date

2025 (46)
2024 (37)
2022 (32)
2023 (27)
2020 (22)
2021 (19)
2019 (15)
2018 (14)
2014 (10)
2017 (9)
2015 (7)
2013 (6)
2026 (4)
2016 (3)
2011 (3)
2008 (3)
2010 (2)
2009 (1)
2003 (1)

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ppcor: An R Package for a Fast Calculation to Semi-partial Correlation Coefficients.

Not available

S-EPMC4681537 | biostudies-literature

Biological toxicity and inflammatory response of semi-single-walled carbon nanotubes.

Not available

S-EPMC3189226 | biostudies-literature

Integrative gene network construction to analyze cancer recurrence using semi-supervised learning.

Not available

S-EPMC3908883 | biostudies-literature

Effect of long-term high CO2 environment on gene expression of Phaeodactylum tricornutum

P. tricornutum (Bacillariophyta, Pennatae, NEPCC640) was obtained from the Algal Center of the Institute of Oceanology of the Chinese Academy of Sciences. The cells were cultured in a modified f/2 medium (Guillard, 1975) at 20 +/- 1C, and illuminated with 120 umol photon m-2 s-1 under a 12:12 light:...

ORGANISM(S): Phaeodactylum tricornutum

2019-11-07 | E-MTAB-8351 | biostudies-arrayexpress

RNA-seq of murine small intestinal organoids treated with Ep300/Crebbp inhibitor I-CBP112 against untreated controls

Murine small intestinal organoids were cultured in the presence or absence of 3µM inhibitor I-CBP112 (PubChem CID 90488984), which targets E1A Binding Protein P300 (Ep300) and Creb-binding protein (Crebbp, Cbp). Organoids were grown in culture media containing EGF, Noggin and R-spondin (ENR), media ...

ORGANISM(S): Mus musculus

2020-12-16 | E-MTAB-9290 | biostudies-arrayexpress

Adhesion Improvement of Solvent-Free Pressure-Sensitive Adhesives by Semi-IPN Using Polyurethanes and Acrylic Polymers.

Not available

S-EPMC9571291 | biostudies-literature

Development of early prediction model for pregnancy-associated hypertension with graph-based semi-supervised learning.

Not available

S-EPMC9499925 | biostudies-literature

A semi-automatic cell type annotation method for single-cell RNA sequencing dataset.

Not available

S-EPMC7560448 | biostudies-literature

Application of a semi-automated dicentric scoring system in triage and monitoring occupational radiation exposure.