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TranscriptomicsChromatin immunoprecipitation of C. elegans intestine
For each experiment (as described in Pauli et al. 2006): Channel 1: whole worm lysate from strain SD1084 carrying transgene Pges-1::FLAG::PAB-1 Channel 2: mRNA immunoprecipitated from strain SD1084 carrying transgene Pges-1::FLAG::PAB-1 mRNA was amplified and hybridized to C. elegans DNA arrays fro...
ORGANISM(S): Caenorhabditis elegans 
2006-01-04 | E-SMDB-3592 | biostudies-arrayexpress
TranscriptomicsmRNA tagging (intestine)
For each experiment (as described in Pauli et al. 2006): Channel 1: whole worm lysate from strain SD1084 carrying transgene Pges-1::FLAG::PAB-1 Channel 2: mRNA immunoprecipitated from strain SD1084 carrying transgene Pges-1::FLAG::PAB-1 mRNA was amplified and hybridized to C. elegans DNA arrays fro...
ORGANISM(S): Caenorhabditis elegans 
2006-02-02 | E-GEOD-4150 | biostudies-arrayexpress
TranscriptomicsTranscriptional profile of C. elegans following RNAi of elt-2 [L1 stage]
We used RNA-seq to identify 162 genes that are differentially-regulated following elt-2 RNAi Whole-worm mRNA was sequenced from elt-2 RNAi- and control-fed worms. Biological triplicates were assay for each condition
ORGANISM(S): Caenorhabditis elegans 
2016-03-22 | E-GEOD-69261 | biostudies-arrayexpress
TranscriptomicsIntestine mRNA tagging
mRNA tagging in the intestine of C. elegans. FLAG::PAB-1 was expressed from the intestine-specific promoter for ges-1 and used to immunoprecipitate FLAG::PAB-1/mRNA complexes from the intestine with anti-FLAG antibody on agarose beads. This mRNA was amplified, cDNA was synthesized and labeled with...
ORGANISM(S): Caenorhabditis elegans 
2010-06-05 | E-GEOD-2626 | biostudies-arrayexpress
TranscriptomicsTranscriptional profile of C. elegans following RNAi of elt-2 [L4 stage]
We used RNA-seq to identify 292 genes that are differentially-regulated following elt-2 RNAi Whole-worm mRNA was sequenced from elt-2 RNAi- and control-fed worms. Biological triplicates were assay for each condition
ORGANISM(S): Caenorhabditis elegans 
2016-03-22 | E-GEOD-69262 | biostudies-arrayexpress
TranscriptomicsLudwig Institute/UCSD ENCODE project June 2007 Release
The readout of genome information is controlled by transcriptional regulatory elements, but a comprehensive view of the combinatorial control by these DNA sequences, which bind regulatory protein and/or the modified histones in regulating gene transcription, is clearly preliminary. We have developed...
ORGANISM(S): Homo sapiens 
2007-06-01 | E-GEOD-7872 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of dauer gene expression in Caenorhabditis elegans
These are the 94 microarray experiments that are published in the paper: John Wang and Stuart K. Kim. Global analysis of dauer gene expression in Caenorhabditis elegans, Development 2003 130: 1621-1634. There are 94 individual microarray experiments divided into 3 broad experiments. The first experi...
ORGANISM(S): Caenorhabditis elegans 
2005-07-13 | E-SMDB-1964 | biostudies-arrayexpress
TranscriptomicsTranscriptional profile of C. elegans following over-expression of elt-2 [L4 stage & Day 13]
We used RNA-seq to discover that gene expression changes during aging are attenuated in elt-2 overexpressors relative to controls Whole-worm mRNA was sequenced from worms over-expressing elt-2 and control worms. Five biological replicates were collected for each condition.
ORGANISM(S): Caenorhabditis elegans 
2016-03-22 | E-GEOD-69263 | biostudies-arrayexpress
GenomicsIdentification of Transcription Factor SKN-1::GFP Binding Regions in L1
modENCODE_submission_2622 This submission comes from a modENCODE project of Michael Snyder. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is ta...
ORGANISM(S): Caenorhabditis elegans 
2011-02-18 | E-GEOD-25810 | biostudies-arrayexpress
GenomicsIdentification of Transcription Factor PHA-4::GFP Binding Regions in Late Embryo
modENCODE_submission_2598 This submission comes from a modENCODE project of Michael Snyder. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is ta...
ORGANISM(S): Caenorhabditis elegans 
2011-02-18 | E-GEOD-25798 | biostudies-arrayexpress
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