Kir - OmicsDI

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mouse gut metagenome (2)
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mixed sample (1)
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Organisms

Homo sapiens (54)
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Repository

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Tissue

Cell suspension culture (2)
Cell culture (2)
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Disease

Not Available (375)

Technology Type

Mass spectrometry (14)
GCP (6)
Mass Spectrometry (5)
P100 (4)
Whole Genome Sequencing (3)
QPCR (3)
RNA-seq (3)
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KINOMEscan (3)
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Instrument Platform

Illumina NovaSeq 6000 (254)
NextSeq 500 (46)
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Illumina HiSeq 4000 (26)
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Illumina NovaSeq X (18)
Illumina HiSeq 2000 (12)
N/A (11)
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NA (7)
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None (3)
Illumina HiSeq X (3)
Single-Cell Extraction: For enzymatic digestion, pronase (Septomyces argeus, 1 mg/mL) was applied for 25 minutes at room temperature for P0 to P8 datasets. Cells were dissociated and triturated into a single-cell suspension in ACSF supplemented with 1% fetal calf serum (FCS) and DNase (1 µL/10 mL). Trituration was performed using three glass Pasteur pipettes of decreasing diameters. For P30 datasets, enzymatic digestion and cell dissociation were carried out using the Worthington Papain Dissociation System, following the manufacturer’s instructions. Single-Nuclei Extraction: For nuclei isolation, the Hibernate™-E Medium was removed, and 500 µL of chilled 0.1X NP40 Lysis Buffer was added. Tissue was homogenized using a Pellet Pestle (15 strokes) and incubated on ice for 5 minutes. The suspension was pipette-mixed 10 times using a wide-bore pipette tip and incubated for an additional 10 minutes on ice. Following lysis, 500 µL of chilled wash buffer was added, and the mixture was pipette-mixed 5 times using a regular-bore pipette tip. The suspension was filtered through a 30 µm cell strainer into a 50 mL tube to remove debris. The filtered suspension was transferred to a 1.5 mL tube and centrifuged at 950 × g for 10 minutes at 4°C. The supernatant was carefully removed, and the nuclei pellet was retained for downstream analysis. (2)
10X (2)
Octo MACS (2)
10X Genomics Chromium Controller (2)
MA900, Sony (2)
Illumina Genome Analyzer IIx (2)
Illumina Genome Analyzer II (2)

Publication Date

2022 (191)
2021 (151)
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2019 (107)
2018 (84)
2024 (68)
2023 (67)
2020 (32)
2015 (32)
2014 (23)
2012 (22)
2016 (16)
2017 (12)
2011 (12)
2013 (11)
2010 (6)
2007 (5)
2008 (4)
2004 (2)
2006 (1)
2009 (1)

UNIPROT ID/AC

PTSO_ECOLI (1)
FLIC_ECOLI (1)
YEEY_ECOLI (1)
THIM_ECOLI (1)
THIG_ECOLI (1)
THIC_ECOLI (1)
TTDA_ECOLI (1)
DMSA_ECOLI (1)
CASC_ECOLI (1)
THIE_ECOLI (1)
FEPE_ECOLI (1)
HOFQ_ECOLI (1)
IF2_ECOLI (1)
YKGF_ECOLI (1)
MCP1_ECOLI (1)
RL34_ECOLI (1)
AAEB_ECOLI (1)
PSPE_ECOLI (1)
THID_ECOLI (1)
YAHF_ECOLI (1)
THIS_ECOLI (1)
MDH_ECOLI (1)
UBIU_ECOLI (1)
T1RK_ECOLI (1)
ARAG_ECOLI (1)
RL31_ECOLI (1)
GUDP_ECOLI (1)
OMPN_ECOLI (1)
CUSB_ECOLI (1)
YDHP_ECOLI (1)

CHEBI ID

CHEBI:37023 (2)
CHEBI:30915 (2)
CHEBI:27389 (2)
CHEBI:15741 (2)
CHEBI:17992 (2)
CHEBI:15891 (2)
CHEBI:16335 (2)
CHEBI:17521 (2)
CHEBI:83517 (1)
CHEBI:8191 (1)
CHEBI:774944 (1)
CHEBI:119569 (1)
CHEBI:309829 (1)
CHEBI:444892 (1)
CHEBI:138738 (1)
CHEBI:83598 (1)
CHEBI:199024 (1)
CHEBI:167309 (1)
CHEBI:86990 (1)
CHEBI:83779 (1)
CHEBI:83829 (1)
CHEBI:83645 (1)
CHEBI:71241 (1)
CHEBI:41275 (1)
CHEBI:83394 (1)
CHEBI:75331 (1)
CHEBI:35331 (1)
CHEBI:28742 (1)
CHEBI:29083 (1)
CHEBI:229981 (1)

Metabolite Name

Rutin (4)
Pantothenic acid (4)
Ribitol (3)
Sorbitol (3)
Hydroquinone (3)
Ciprofloxacin (3)
Pioglitazone (3)
Dimethylglycine (3)
Rosmarinic acid (3)
Thiabendazole (3)
Kinetin (3)
Metoprolol (3)
Niacinamide (3)
4-Methylumbelliferone (3)
1-Aminocyclopropanecarboxylic acid (3)
Gentisic acid (3)
P-Hydroxyphenylacetic acid (3)
Phosphoserine (3)
Metribuzin (3)
5'-Methylthioadenosine (3)
Hesperetin (3)
Spermidine (3)
Allantoin (3)
L-Asparagine (3)
Glycerol 3-phosphate (3)
Creatine (3)
Taurine (3)
Guanine (3)
Adenosine (3)
Tyramine (3)

First Public Date

2025 (19)
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2024 (11)
2020 (8)
2014 (6)
2018 (5)
2019 (2)
2016 (2)
2017 (1)
2015 (1)

Classification

protozoa (1)

Study type

RNA-seq of coding RNA from single cells (339)
Transcription profiling by array (66)
RNA-seq of coding RNA (27)
Single nucleus RNA sequencing (23)
ChIP-seq (13)
ScATAC-seq (10)
Human - Single-cell sequencing (5)
Cell line - Single-cell sequencing (4)
Animal - Single-cell sequencing (4)
Cell line - High-throughput sequencing (4)
Comparative genomic hybridization by array (4)
Unknown experiment type (3)
Human - High-throughput sequencing (3)
Methylation profiling by high throughput sequencing (3)
RNA-seq of non coding RNA (3)
Differential (2)
Genotyping by array (2)
ATAC-seq (2)
Other (2)
DNA-seq (2)
Methylation profiling by array (2)
RAN-seq of total RNA from single cells (1)
Baseline (1)
RNA-seq of non coding RNA from single cells (1)
MicroRNA profiling by array (1)
Genotyping by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2025 (141)
2023 (134)
2021 (125)
2022 (124)
2024 (119)
2026 (113)
2020 (90)
2016 (77)
2015 (77)
2019 (73)
2014 (61)
2018 (59)
2017 (55)
2012 (52)
2011 (42)
2013 (41)
2010 (35)
2009 (24)
2008 (22)
2007 (16)
2006 (15)
2005 (7)
2004 (6)
2003 (5)
2001 (5)
2000 (4)
1998 (2)
2002 (1)
1999 (1)

Lab affiliation

Nuffield Department of Medicine, University of Oxford, Oxford, UK (1)
Department of Cell and Regenerative Biology, University ofWisconsin-Madison, Madison, Wisconsin, 53705, USA (1)
Departments of Anatomy & Neurobiology, Boston University, Boston, MA 02215, USA Center for Systems Neuroscience, Boston University, Boston, MA 02115, USA Center for Neurophotonics, Boston University, Boston, MA 02115, USA Department of Neurology, Boston University, Boston, MA 02115, USA (1)
Department of Diagnostic Sciences, Ghent University, Ghent, Belgium. Cancer Research Institute Ghent (CRIG), Ghent, Belgium. (1)
Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton 3800, Victoria, Australia (1)

Tags

pathogen:protozoan (1)
pathogen (1)

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Complete Haplotype Phasing of the MHC and KIR Loci with Targeted HaploSeq

Rapid advances in biochemical technologies have enabled several strategies for typing candidate HLA alleles, but linking them into a single MHC haplotype structure remains challenging. Here we have developed a multi-loci haplotype phasing technique and demonstrate its utility towards phasing of MHC ...

ORGANISM(S): Homo sapiens

2016-02-01 | E-GEOD-65726 | biostudies-arrayexpress

RNA-Seq of FACS-sorted, KIR-CD39-,KIR+CD39- and KIR+CD39+, Uterine NK cells (uNK cells) from human decidual samples

Uterine NK cells (uNK cells) form a distinct immune cell population in the endometrium and decidua. Here, we FACS-sorted KIR-CD39-,KIR+CD39- and KIR+CD39+ uNK cells from decidual samples.

ORGANISM(S): Homo sapiens

2021-02-19 | E-MTAB-8709 | biostudies-arrayexpress

Chimpanzee KIR

KIR typing in chimpanzees

PRJEB39704 | ENA

Mamu-KIR

Characterization of Mafa-KIR alleles

PRJEB36522 | ENA

Mamu-KIR

Characterization of mamu-KIR alleles

PRJEB36526 | ENA

RNA-Seq of FACS-sorted, KIR-CD39-,KIR+CD39- and KIR+CD39+, Uterine NK cells (uNK cells) from human decidual samples

PRJEB36343 | ENA

KIR alleles in primates.

KIR alleles in primates found with NGS.

PRJEB28291 | ENA

KIR gene content imputation from single-nucleotide polymorphisms in the Finnish population

The killer cell immunoglobulin-like receptor (KIR) gene cluster on chromosome 19 encodes cell surface glycoproteins that bind class I human leukocyte antigen (HLA) molecules as well as some other ligands. KIR gene gene copy number variation associates with the outcome of transplantations and suscept...

EGAS00001005457 | EGA

Transcription profiling of Plasmodium knowlesi to verify kir and sicavar gene expression

Verification of kir and sicavar gene expressions in Plasmodium knowlesi mixed culture.

ORGANISM(S): Plasmodium knowlesi

2008-03-01 | E-TABM-416 | biostudies-arrayexpress

Transcriptional profiling of human KIR+ and KIR- CD8 T cells by bulk RNA-seq

PRJNA708208 | ENA

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2581 Results

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