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TranscriptomicsDetection and mapping of species and strains from the diatom genus Pseudo-nitzchia (Bacillariophyceae) along the Oregon and Washington coast using microarray-based, field-deployable, rapid, high-resolution assay
DNA oligonucleotide microarrays were designed with 307 probes for 96 internal transcribed spacer (ITS1, located between 18S and 26S rRNA genes) sequences of known species and strains from the genus Pseudo-nitzschia (Bacillariophyceae). In addition, microarrays also carried 1893 probes targeting ITS...
ORGANISM(S): Pseudo-nitzschia 
2012-05-31 | E-GEOD-27141 | biostudies-arrayexpress
UnknownNationwide reconnaissance of contaminants of emerging concern in source and treated drinking waters of the United States.
Not available
S-EPMC7017586 | biostudies-literature
TranscriptomicsCandidatus pelagibacter ubique HTCC1062 requires 4-amino-5-hydroxymethyl-2-methylpyrimidine, an abundant thiamine precursor in the sea
Thiamine is often undetectable in ocean surface waters where Pelagibacter cells are numerically abundant. Despite this, Pelagibacter cells are missing de novo thiamine synthesis pathways. We show that an eogenous source of the thiamine precursor HMP is required for thiamine synthesis in Pelagibact...
ORGANISM(S): Candidatus Pelagibacter ubique HTCC1062 
2015-01-20 | E-GEOD-46673 | biostudies-arrayexpress
UnknownA database of zooplankton biomass in Australian marine waters.
Not available
S-EPMC7478976 | biostudies-literature
TranscriptomicsExpanding the Pathways of Manganese Homeostasis: Role of a Small Manganese Chaperone Protein, MntS
Escherichia coli possesses >65 small proteins of <50 amino acids, many of which are uncharacterized. We have identified a new small protein, MntS, involved in manganese homeostasis. Manganese is a critical micronutrient, serving as an enzyme cofactor and protecting against oxidative stress. Yet mang...
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2011-12-08 | E-GEOD-25318 | biostudies-arrayexpress
UnknownOxygen depletion recorded in upper waters of the glacial Southern Ocean.
Not available
S-EPMC4821880 | biostudies-literature
MetabolomicsA shotgun metabolomics approach to characterize the dissolved organic matter pool in the Samail Ophiolite aquifer
The process of serpentinization has been implicated in supporting life on both early Earth and other worlds in our Solar System. While numerous studies have provided clues to the survival strategies of microbial communities in serpentinizing environments on modern Earth, characterizing microbial act...
2023-03-02 | MTBLS6081 | MetaboLights
TranscriptomicsMolecular analysis of endocrine disruption in hornyhead turbot captured from wastewater treatment plant discharge locations in Southern California
Hornyhead turbot (Pleuronichthys verticalis) captured near sewage outfalls are used as sentinel fish for monitoring exposure to industrial and agricultural chemicals of ~20 million people living in coastal southern California. Although analyses of hormones in blood and organ morphology and histology...
ORGANISM(S): Pleuronichthys verticalis 
2013-12-10 | E-MEXP-3852 | biostudies-arrayexpress
TranscriptomicsLinkage of behavioral and genomic impacts of a wastewater effluent on the fathead minnow
Rivers containing effluents from water treatment plants are complex soups of compounds, ranging from pharmaceuticals to natural hormones. Male fathead minnows (Pimephales promelas) were exposed for 3 weeks to effluent waters from the Metropolitan Wastewater Treatment Plant in St. Paul, MN. Fish wer...
ORGANISM(S): Pimephales promelas 
2010-10-29 | E-GEOD-23490 | biostudies-arrayexpress
UnknownEvaluating the influence of seasonal stratification on mercury methylation rates in the water column and sediment in a contaminated section of a western U.S.A. reservoir.
Not available
S-EPMC10259237 | biostudies-literature
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