Knight M M MM - OmicsDI

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Unknown (379)
Proteomics (41)
Transcriptomics (28)
Genomics (15)
Metabolomics (13)

Organisms

Homo sapiens (47)
Mus musculus (14)
Arabidopsis thaliana (5)
Escherichia coli str. K-12 substr. MG1655 (3)
Drosophila melanogaster (3)
Aspergillus fumigatus (2)
Saccharomyces cerevisiae (2)
Burkholderia ambifaria (1)
Saccharomyces uvarum (1)
Saccharomyces cerevisiae S288C (1)
Rattus norvegicus (1)
Danio rerio (1)
Bacteria (1)
Carboxydothermus ferrireducens DSM 11255 (1)
Mesoplasma florum L1 (1)
Solanum tuberosum (1)

Repository

pride (41)
biostudies-arrayexpress (30)
EGA (13)
MetaboLights (11)
GNPS (2)

Tissue

Cell culture (11)
Epithelial cell (9)
Fibroblast (6)
Breast (4)
Blood platelet (2)
Kidney (2)
Lung (2)
Pancreas (2)
Platelet (2)
Stem cell (2)
Brain (1)
Colon (1)
Diploid cell (1)
Early embryonic cell (1)
Fibroblast of breast (1)
Heart (1)
Leaf (1)
Monocyte (1)
Myoblast (1)
Peripheral blood (1)
Permanent cell line cell (1)
Primary cell (1)
Root (1)
Skin (1)
Small intestine (1)
Smooth muscle cell (1)

Disease

Breast cancer (8)
Pancreatic ductal carcinoma (3)
Cardiovascular system disease (2)
Ischaemia reperfusion injury (1)
Acral lentiginous melanoma (1)
Acute monocytic leukemia (1)
Acute promyelocytic leukemia (1)
Alzheimer's disease 1 (1)
Colon cancer (1)
Colorectal cancer (1)
Malignant neoplasm of ovary (1)
Non-small cell lung carcinoma (1)
Pancreatic cancer (1)
Pancreatic ductal adenocarcinoma (1)

Technology Type

Mass Spectrometry (41)
Shotgun proteomics (27)
Bottom-up proteomics (10)
Mass spectrometry (9)
Illumina 15K (8)
Data-dependent acquisition (6)
Affinity purification coupled with mass spectrometry proteomics (3)
NMR spectroscopy (2)
Affinity proteomics (2)
Mass spectrometry assay (1)
Data-independent acquisition (1)
DiaPASEF (1)
Gel-based experiment (1)
Top-down proteomics (1)

Instrument Platform

NextSeq 500 (8)
Liquid Chromatography MS - positive - reverse phase (7)
Illumina MiSeq (3)
Illumina HiSeq 2500 (2)
Illumina HiSeq 2000 (2)
Illumina Genome Analyzer IIx (1)
NextSeq 2000 (1)
NextSeq 550 (1)
Illumina NovaSeq 6000 (1)
Q Exactive (1)
Thermo Scientific TRACE 1310 GC-MS (1)
Bruker (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2024 (13)
2023 (12)
2021 (10)
2025 (9)
2020 (6)
2019 (5)
2022 (4)
2017 (4)
2011 (4)
2026 (3)
2018 (3)
2014 (2)
2010 (2)
2009 (2)
2008 (2)
2015 (1)
2016 (1)

CHEBI ID

CHEBI:16359 (4)
CHEBI:15741 (3)
CHEBI:16708 (3)
CHEBI:16811 (3)
CHEBI:28865 (3)
CHEBI:30769 (3)
CHEBI:35038 (3)
CHEBI:1148 (2)
CHEBI:116314 (2)
CHEBI:139138 (2)
CHEBI:1427 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)
CHEBI:15354 (2)
CHEBI:15366 (2)
CHEBI:15603 (2)
CHEBI:15611 (2)
CHEBI:15940 (2)
CHEBI:16027 (2)
CHEBI:16113 (2)
CHEBI:16196 (2)
CHEBI:16235 (2)
CHEBI:16236 (2)
CHEBI:16449 (2)
CHEBI:16551 (2)
CHEBI:16610 (2)
CHEBI:16704 (2)
CHEBI:17191 (2)
CHEBI:17234 (2)
CHEBI:17306 (2)

Metabolite Name

Cholic acid (3)
Succinate (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
9(10)-EpOME (2)
Adenine (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
Cholic acid (2)
Dibutyl phthalate (DBP) (2)
Elaidic acid (2)
Glycerol (2)
Inosine (2)
Lyso-PC(16:0) (2)
Maltose (2)
Monoolein (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Oleic acid (2)
Palmitoleic acid (2)
Sucrose (2)
Taurocholic acid (2)
Thymine (2)
Uracil (2)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
1,3,5-triprop-2-enyl-1,3,5-triazaperhydroine-2,4,6-trione (1)
1,4a-dimethyl-9-oxo-7-propan-2-yl-3,4,10,10a-tetrahydro-2H-phenanthrene-1-carboxylic acid (1)
1-(9Z-Octadecenoyl)-sn-glycero-3-phosphocholine (1)

Study type

Transcription profiling by array (11)
Hi-C (6)
RNA-seq of coding RNA (6)
ChIP-chip by tiling array (2)
ChIP-seq (2)
High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)

Release Date

2022 (56)
2021 (56)
2023 (48)
2024 (34)
2025 (29)
2020 (25)
2019 (22)
2018 (21)
2015 (20)
2016 (14)
2009 (13)
2017 (11)
2012 (11)
2011 (10)
2014 (9)
2013 (9)
2008 (8)
2026 (5)
2010 (5)
2007 (3)

Lab affiliation

CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (4)
CRUK Beatson Institute (3)
University of Manchester (2)
AbbVie Bioresearch Center, Worcester, MA 01605, United States (1)
Affiliation: Division of Cell Matrix Biology & Regenerative Medicine, The University of Manchester [Data also submitted and owned by Dr Matiss Ozols (matiss.ozols@manchester.ac.uk)] (1)
CRUK - Scotland Institute - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (1)
CRUK Beatson Institute, Switchback Road, Glasgow G61 1BD, UK. (1)
Cancer Early Detection Advanced Research Center, Knight Cancer Institute, Department of Molecular & Medical Genetics, Oregon Health & Science University, Portland, OR 97239, U.S.A. (1)
Cancer Research UK Scotland Institute (Formerly the Cancer Research UK Beatson Institute) Garscube Estate Switchback Road Bearsden Glasgow, G61 1BD (1)
Chemisrty department Yale University (1)
Denali Therapeutics (1)
Department of Biochemistry & Molecular Biology, Dalhousie University, Halifax, Nova Scotia Canada B3H4R2, Department of Pediatrics, Atlantic Research Centre, Dalhousie University, Halifax, Nova Scotia Canada B3H4R2 (1)
Department of Immunology and Cell Biology, Faculty of Medicine and Health Sciences, Université de Sherbrooke (1)
Division of Cell Matrix Biology and Regenerative Medicine School of Biological Sciences Faculty of Biology, Medical and Health Sciences University of Manchester (1)
EDyP (1)
Keck MS & Proteomics Resource Yale School of Medicine (1)
Knight Cancer Institute Oregon Health & Science University Portland, OR 97239 USA (1)
Knight Cardiovascular Institute Oregon Health & Science University 3303 SW Bond Ave Portland, Oregon 97239, USA (1)
Knight Cardiovascular Institute Oregon Health & Science University Portland, Oregon USA (1)
Kyungpook national university (1)
Lab Head Systems Oncology group at CRUK Manchester Institute (1)
Lab Head of Systems Oncology lab at CRUK Manchester Institute (1)
Lab head Systems Oncology group at CRUK Manchester Institute (1)
Lab head of System Oncology lab at CRUK Manchester Institute (1)
Lab head of the Systems Oncology group at CRUK MI. (1)
Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute Jena (1)
Reader In Cell Signalling & Proteomics, Barts Cancer Institute (1)
Residorph Lab, Mass Spectrometry Core - Skaggs School of Pharmacy, University of Colorado - Anschutz Medical Campus (1)
The Institute of Cancer Research (1)
The Knight Cardiovascular Institute Oregon Health & Science University 3181 SW Sam Jackson Park Road Portland, OR 97239, USA (1)

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Transcription profiling of Arabidopsis sfr6 freezing-sensitive mutant and cls8 chilling sensitive mutant to investigate the molecular basis of chilling and freezing stress

Our analysis of the sfr6 freezing-sensitive mutant (Knight, H., Veale, E., Warren, G. J. and Knight, M. R. (1999). Plant Cell 11, 875-886.) and cls8 (unpublished) chilling-sensitive mutant of Arabidopsis, has revealed that the expression of certain cold-regulated genes is aberrant in both these mut...

ORGANISM(S): Arabidopsis thaliana

2008-06-14 | E-GEOD-6167 | biostudies-arrayexpress

Transcription profiling of Arabidopsis response to chilling and freezing stress

ORGANISM(S): Arabidopsis thaliana

2022-11-21 | E-NASC-37 | biostudies-arrayexpress

Transcriptomic analysis of interactions between Aspergillus fumigatus conidiospores and human bronchial epithelial cells

This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

ORGANISM(S): Aspergillus fumigatus

2011-06-01 | E-GEOD-16637 | biostudies-arrayexpress

Functional genomics of Aspergillus fumigatus conidiospores interacting with human bronchial epithelial cells

The cells of the airway epithelium play critical roles in host defense to inhaled irritants, and in asthma pathogenesis. These cells are constantly exposed to conidiospores of the ubiquitous mould Aspergillus fumigatus, which are small enough to reach the alveoli. This exposure is asymptomatic in mo...

ORGANISM(S): Aspergillus fumigatus

2011-06-01 | E-GEOD-16630 | biostudies-arrayexpress

Functional genomics of human bronchial epithelial cells interacting with conidiospores of Aspergillus fumigatus

ORGANISM(S): Homo sapiens

2011-06-01 | E-GEOD-16628 | biostudies-arrayexpress

Mesoplasma florum proteome analysis by 2D LC-MS/MS

The near-minimal bacterium Mesoplasma florum constitutes an interesting model for synthetic genomics and systems biology studies due to its small genome, fast growth rate, and lack of pathogenic potential. However, some fundamental aspects of its biology remain largely unexplored. Here, we report a ...

ORGANISM(S): Mesoplasma florum L1 Bacteria

2020-11-16 | PXD019922 | Pride

SWOG S0809: A Phase II Intergroup Trial of Adjuvant Capecitabine and Gemcitabine Followed by Radiotherapy and Concurrent Capecitabine in Extrahepatic Cholangiocarcinoma and Gallbladder Carcinoma.

Not available

S-EPMC4534524 | biostudies-literature

Does kisspeptin exert a local modulatory effect on bovine ovarian steroidogenesis?

Not available

S-EPMC9986390 | biostudies-literature

Low input Hi-C datasets for a diffuse large B-cell lymphoma sample, healthy control human B-cells and mouse embryonic stem cells

In this experiment, we've examined chromatin conformation of OG2 (B6; CBA-Tg(Pou5f1-EGFP)2Mnn/J; stock number 004654) mouse stem cells cultured as described in (Shi et al., 2008), using different amounts of starting cells. We performed a modified in situ Hi-C protocol for 6 samples digested with Mbo...

ORGANISM(S): Mus musculus

2018-11-30 | E-MTAB-5875 | biostudies-arrayexpress

Transcription profiling by array of Burkholderia ambifaria during four growth conditions which modulated enacyloxin secretion

Gene expression was examined during four growth conditions which modulated antimicrobial secretion in B. ambifaria AMMD. A minimal salts medium (BSM; Hareland et al. 1975. J Bacteriol 121:272-85) with 0.05% yeast extract was used for all comparisons with the carbon source (4 g/L) and growth conditio...

ORGANISM(S): Burkholderia ambifaria

2011-07-13 | E-MEXP-2819 | biostudies-arrayexpress

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