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TranscriptomicsNext-Generation Sequencing of RNA Isolated from Paired Fresh-Frozen and Formalin-Fixed Paraffin-Embedded Samples of Human Cancer and Normal Tissue
This experiment contains the RNA-Seq samples only. Formalin-fixed, paraffin-embedded (FFPE) tissues are an invaluable resource for clinical research. However, nucleic acids extracted from FFPE tissues are fragmented and chemically modified making them challenging to use in molecular studies. We anal...
ORGANISM(S): Homo sapiens 
2014-09-04 | E-MTAB-2523 | biostudies-arrayexpress
TranscriptomicsExpression data from lack of DNA topoisomerase I, DNA topoisomerase II and complete lack of both topoisomerases
Here we dissect the transcriptional response in S. cerevisiae cells lacking DNA topoisomerases. We use microarray technology coupled with a functional genomics approach and demonstrate intimate connections between topoisomerase dependency, promoter chromatin architecture and gene transcription. Our ...
ORGANISM(S): Saccharomyces cerevisiae 
2012-07-31 | E-GEOD-22809 | biostudies-arrayexpress
GenomicsThe paired FF/FFPE colon set, RNA-Seq - samples
Description not provided
EGAD00001000831 | EGA
GenomicsThe paired FF/FFPE colon set, Exome-Seq - samples
Description not provided
EGAD00001000834 | EGA
GenomicsThe FF bladder signature conservation set - samples
Description not provided
EGAD00001000833 | EGA
GenomicsThe paired FF/FFPE prostate set - samples
Description not provided
EGAD00001000830 | EGA
GenomicsThe paired FF/FFPE bladder set - samples
Description not provided
EGAD00001000832 | EGA
GenomicsThe storage time FFPE set - samples
Description not provided
EGAD00001000829 | EGA
GenomicsThe colon KRAS/BRAF variants detection set - samples
Description not provided
EGAD00001000835 | EGA
GenomicsNext-Generation Sequencing of RNA and DNA Isolated from Paired Fresh-Frozen and Formalin-Fixed Paraffin-Embedded Samples of Human Cancer and Normal Tissue
Formalin-fixed, paraffin-embedded (FFPE) tissues are an invaluable resource for clinical research. However, nucleic acids extracted from FFPE tissues are fragmented and chemically modified making them challenging to use in molecular studies. We analysed 23 fresh-frozen (FF), 35 FFPE and 38 paired FF...
EGAS00001000737 | EGA
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