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TranscriptomicsPoplar-Laccaria: A Timecourse of Mycorrhizal Root Tip Development
This study characterizes the transcriptomic alterations of P. trichocarpa during interaction with the ectomycorrhizal fungus Laccaria bicolor S238N. Four time-points were analyzed, two weeks, four weeks , six weeks and twelve weeks after inoculation. We performed 32 hybridizations (NimbleGen) with s...
ORGANISM(S): Populus trichocarpa 
2014-10-09 | E-GEOD-62172 | biostudies-arrayexpress
TranscriptomicsLaccaria-Poplar: A Timecourse of Mycorrhizal Root Tip Development
This study characterizes the transcriptomic alterations of Laccaria bicolor S238N during interaction with P. trichocarpa. Four time-points were analyzed, two weeks, four weeks , six weeks and twelve weeks after inoculation and compared to the transcriptome of free-living mycelium from Laccaria bicol...
ORGANISM(S): Populus trichocarpa 
2014-10-10 | E-GEOD-62225 | biostudies-arrayexpress
TranscriptomicsLaccaria-Douglas fir: A Timecourse of Mycorrhizal Root Tip Development
This study characterizes the transcriptomic alterations of Laccaria bicolor S238N during interaction with Pseudotsuga menziesii. Three time-points were analyzed, two weeks, four weeks and six weeks after inoculation and compared to the transcriptome of free-living mycelium from Laccaria bicolor S238...
ORGANISM(S): Laccaria bicolor S238N-H82 
2014-10-10 | E-GEOD-62226 | biostudies-arrayexpress
TranscriptomicsTranscriptome analyses of the Laccaria bicolor-Populus trichocarpa mycorrhiza development
Illumina GAIIx technology was used to generate mRNA profiles from the ectomycorrhizal fungi Laccaria bicolor colonizing roots of Populus trichocarpa. Samples were taken after two, four and 12 weeks of contact in order to identify mycorrhiza-regulated transcripts. 37bp reads were generated and aligne...
ORGANISM(S): Populus trichocarpa 
2014-02-08 | E-GEOD-54789 | biostudies-arrayexpress
TranscriptomicsEthylene and jasmonic acid act as negative modulators during mutualistic symbiosis between Laccaria bicolor and Populus roots
The Poplar transcriptome was analyzed in mycorrhizal root tips in contact with Laccaria bicolor for 2 weeks. During mycorrhization the roots were treated with either 250M-BM-5m ACC, 10nM JA or 500M-BM-5M SA and compared to untreated mycorrhiza or control roots without contact to L. bicolor. In addit...
ORGANISM(S): Populus tremula x Populus alba 
2013-12-19 | E-GEOD-53475 | biostudies-arrayexpress
TranscriptomicsDual transcriptomic analysis of the interaction between the ectomycorrhizal fungus Laccaria bicolor S238N and soil bacterium Collimonas fungivorans Ter331
In order to get insights into the ability of ectomycorrhizal fungi to perceive their biotic environment as well as into the mechanisms of the interactions between ectomycorrhizal fungi and soil bacteria, we analysed the transcriptomic response of the ectomycorrhizal fungus L. bicolor and one detrime...
ORGANISM(S): Laccaria bicolor 
2014-06-12 | E-GEOD-53609 | biostudies-arrayexpress
TranscriptomicsMelampsora larici-populina gene expression in different tissues of uredinia
Laser Capture Microdissection (LCM) was used for expression analysis of three contrasted fungal tissues of uredinia corresponding respectively to spores and sporogenous hyphae, fungal structures in the spongy mesophyll and fungal infection structures in the palisade mesophyll. The array probes were ...
ORGANISM(S): Melampsora laricis-populina 
2010-07-22 | E-GEOD-21487 | biostudies-arrayexpress
TranscriptomicsGene expression changes in Cenococcum geophilum-Pinus sylvestris ectomycorrhizal roots compared to Cenococcum geophilum free-living mycelium
Illumina HiSeq technology was used to generate mRNA profiles from Cenococcum geophilum ectomycorrhizal roots compared to free-living mycelium . Mycorrhizal roots were harvested after 3 months, pooled and used for RNA extraction. Reads of 2X100bp were generated and aligned to Cenococcum geophilum (ht...
ORGANISM(S): Cenococcum geophilum 
2016-08-01 | E-GEOD-83909 | biostudies-arrayexpress
TranscriptomicsPoplar-Laccaria Mycorrhizal Roots
This study characterizes the transcriptomic alterations of P. tremula x P. alba at three weeks after inoculation with the ectomycorrhizal fungus Laccaria bicolor. We performed 6 hybridizations (NimbleGen) with samples derived from Populus tremula x P. alba control roots and mycorrhizal root tips. Sa...
ORGANISM(S): Populus tremula x Populus alba 
2015-06-22 | E-GEOD-66237 | biostudies-arrayexpress
TranscriptomicsTranscriptome comparison of ectomycorrhizal, ericoid and orchid mycorrhizal fungi
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Serendipita vermifera 
2015-02-06 | E-GEOD-63947 | biostudies-arrayexpress
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