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ProteomicsEvaluation of the MPA Portable software performance on analyzing benchmark datasets
Within the scope of a technical note we tested our MetaProteomeAnalyzer Portable software workflow on experimental data sets from samples with known composition. For generating a benchmarking data set, the bacterial strains (5BCT) Bacillus subtilis, Escherichia coli, Pseudomonas fluorescens, Microco...
ORGANISM(S): Pseudomonas fluorescens Escherichia coli Micrococcus luteus (Micrococcus lysodeikticus) Desulfovibrio vulgaris str. Hildenborough Bacillus subtilis 
2012-12-13 | PXD007681 | Pride
Bioinformatics Metaproteomics Protein identification Data visualization 
ProteomicsMetaproteomic analysis of a mixed microbial communities extracted from biogas plant sludge
In this study, centrifugal fractionation has been applied for fractionation of two biogas sludge samples to analyze proteins extracted from (i) crude fibers, (ii) suspended microorganisms, and (iii) secreted proteins in the supernatant using a gel-based approach followed by LC-MS/MS identification.
ORGANISM(S): Zea mays (Maize) 
2015-07-21 | PXD001508 | Pride
Metabolism Microbial communities Metaproteomics Differential centrifugation Biogas plant 
ProteomicsMetaproteome of the waste water treatment plant Gerwisch/Germany
In this study the impact of protein fractionation techniques prior to LC/MS analysis was investigated on activated sludge samples derived at winter and summer condition from a full-scale wastewater treatment plant (WWTP). For reduction of the sample complexity, different fractionation techniques inc...
ORGANISM(S): Bacteria 
2015-07-28 | PXD001547 | Pride
Metaproteomics Activated sludge Metaproteomeanalyzer Wastewater treatment plant Offgel isoelectric focusing 
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