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UnknownA Robust and Universal Metaproteomics Workflow for Research Studies and Routine Diagnostics Within 24 h Using Phenol Extraction, FASP Digest, and the MetaProteomeAnalyzer.
Not available
S-EPMC6707425 | biostudies-literature
ProteomicsA robust and universal metaproteomics workflow for research studies and routine diagnostics within 24 hours
A new workflow for metaproteomics is presented in this study and is shown to enable the analysis of a broad range of different samples in only 24 h. The standardized sample preparation includes the combined cell lysis and phenol extraction in a ball mill followed by FASP digestion. The bioinformatic...
ORGANISM(S): Enterobacteriaceae sp. Methanosarcinales 
2019-09-04 | PXD010550 | Pride
Microbial communities Mass spectrometry Environmental proteomics Software Bioinformatics Sample preparation 
ProteomicsEvaluation of the MPA Portable software performance on analyzing benchmark datasets
Within the scope of a technical note we tested our MetaProteomeAnalyzer Portable software workflow on experimental data sets from samples with known composition. For generating a benchmarking data set, the bacterial strains (5BCT) Bacillus subtilis, Escherichia coli, Pseudomonas fluorescens, Microco...
ORGANISM(S): Pseudomonas fluorescens Escherichia coli Micrococcus luteus (Micrococcus lysodeikticus) Desulfovibrio vulgaris str. Hildenborough Bacillus subtilis 
2012-12-13 | PXD007681 | Pride
Bioinformatics Metaproteomics Protein identification Data visualization 
ProteomicsMetaproteomics of fecal samples supports the diagnosis of Crohn’s Disease and Ulcerative Colitis
Objective Crohn’s Disease (CD) and Ulcerative Colitis (UC) are chronic inflammatory diseases of the gastrointestinal tract. Reliable diagnosis of these diseases requires a comprehensive examination of the patient, which include invasive endoscopy. This study assesses whether non-invasive LC-MS/MS ba...
ORGANISM(S): Homo sapiens (Human) 
2019-03-11 | PXD010371 | Pride
• fecal samples • metaproteomics • non-invasive diagnosis • inflammatory bowel disease • crohn’s disease • ulcerative colitis • gastrointestinal tract 
ProteomicsBiogas Plant Survey Magdeburg 2014-2016
Biogas plants (BGPs) produce methane and carbon dioxide through the anaerobic digestion of agricultural waste. Identification of strategies for more stable biogas plant operation and increased biogas yields require better knowledge about the individual degradation steps and the interactions within t...
ORGANISM(S): environmental samples <Methanosarcinales> 
2019-05-03 | PXD009349 | Pride
Anaerobic digestion Biogas process Competition Bacteriophages Anaerobic digestion model 1 Microbial communities Metaproteomeanalyzer Host-phage interactions Syntrophy Metaproteomics 
ProteomicsMetaproteome of the waste water treatment plant Gerwisch/Germany
In this study the impact of protein fractionation techniques prior to LC/MS analysis was investigated on activated sludge samples derived at winter and summer condition from a full-scale wastewater treatment plant (WWTP). For reduction of the sample complexity, different fractionation techniques inc...
ORGANISM(S): Bacteria 
2015-07-28 | PXD001547 | Pride
Metaproteomics Activated sludge Metaproteomeanalyzer Wastewater treatment plant Offgel isoelectric focusing 
UnknownMPA Portable: A Stand-Alone Software Package for Analyzing Metaproteome Samples on the Go.
Not available
S-EPMC5757220 | biostudies-literature
UnknownSurvey of metaproteomics software tools for functional microbiome analysis.
Not available
S-EPMC7654790 | biostudies-literature
ProteomicsDetection, isolation and characterization of phage-host complexes using BONCAT and click chemistry
Phages are viruses that infect prokaryotes and can shape microbial communitiesby lysis, thus offering applications in various fields. However, challengesexist in sampling, isolation and accurate prediction of the host specificity ofphages as well as in the identification of newly replicated virions ...
ORGANISM(S): Escherichia phage Lambda 
2024-08-29 | PXD044316 | Pride
Phage Fluorescence Proteomics Boncat labeling Host range Sequencing Click chemistry Biotin Lc-ms/ms 
ProteomicsMining Nudibranch Symbionts for Biosynthesis of novel Secondary Metabolites
Metatranscriptomic and metaproteomic analysis of C.quadricolor symbiotic bacteria for discovery of new potential biosynthetic clusters
ORGANISM(S): metagenome Chromodoris quadricolor 
2022-12-07 | PXD037957 | Pride
Bcgs Nudibranch Secondary metabolites Metatranscriptomic Metaproteomic 
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