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TranscriptomicspBL1 impairs cellobiose metabolism in Lactococcus lactis
pBL1 is a Lactococcus lactis theta-replicating 10.9-kbp plasmid that encodes the synthetic machinery of the bacteriocin Lcn972. In this work, the transcriptomes of exponentially growing L. lactis with and without pBL1 were compared. A discrete response was observed with a total of ten genes showing ...
ORGANISM(S): Lactococcus lactis 
2011-09-14 | E-GEOD-30625 | biostudies-arrayexpress
UnknownGenome-Wide Analysis of the Cis-Prenyltransferase (CPT) Gene Family in Taraxacum kok-saghyz Provides Insights into Its Expression Patterns in Response to Hormonal Treatments.
Not available
S-EPMC11820359 | biostudies-literature
UnknownConstruction of the first high-density SNP genetic map and identification of QTLs for the natural rubber content in Taraxacum kok-saghyz Rodin.
Not available
S-EPMC9830913 | biostudies-literature
TranscriptomicsThe Transcriptional and Gene Regulatory Network of Lactococcus lactis MG1363 during Growth in Milk
In the present study we examine the changes in the expression of genes of Lactococcus lactis subspecies cremoris MG1363 during growth in milk. To reveal which specific classes of genes (pathways, operons, regulons, COGs) are important, we performed a transcriptome time series experiment. Global anal...
ORGANISM(S): Lactococcus lactis subsp. cremoris MG1363 
2012-09-12 | E-GEOD-40780 | biostudies-arrayexpress
TranscriptomicsThree commercial array platforms compared for DNA copy number detection with DNA isolated from FFPE tissue [NimbleGen]
Formalin-fixed, paraffin-embedded (FFPE) archival tissue is an important source of DNA material. The most commonly used technique to identify copy number aberrations from chromosomal DNA in tumorigenesis is array comparative genomic hybridization (aCGH). Although copy number analysis using DNA from ...
ORGANISM(S): Homo sapiens 
2012-01-17 | E-GEOD-30120 | biostudies-arrayexpress
TranscriptomicsThree commercial array platforms compared for DNA copy number detection with DNA isolated from FFPE tissue [Agilent]
Formalin-fixed, paraffin-embedded (FFPE) archival tissue is an important source of DNA material. The most commonly used technique to identify copy number aberrations from chromosomal DNA in tumorigenesis is array comparative genomic hybridization (aCGH). Although copy number analysis using DNA from ...
ORGANISM(S): Homo sapiens 
2012-01-17 | E-GEOD-30121 | biostudies-arrayexpress
TranscriptomicsSingle cell fitness of B. subtilis correlates with the ability to adapt to various stresses.
How cells dynamically respond to fluctuating environmental conditions depends on the architecture and noise of the underlying genetic circuits. Most work characterizing stress pathways in the model bacterium Bacillus subtilis has been performed on bulk cultures using ensemble assays. However, invest...
ORGANISM(S): Bacillus subtilis 
2012-06-30 | E-GEOD-33506 | biostudies-arrayexpress
TranscriptomicsSupervised Lowess normalization of comparative genome hybridization data: application to lactococcal strain comparisons.
Background Array-based comparative genome hybridization (aCGH) is commonly used to determine the genomic content of bacterial strains. In aCGH data, systematic errors are comparable to those occurring in transcriptome data. However, especially for microbes, an additional source of variation exists: ...
ORGANISM(S): Lactococcus lactis subsp. cremoris MG1363 
2008-07-19 | E-GEOD-9039 | biostudies-arrayexpress
TranscriptomicsSubpopulation array data, Veening et al.
The transcriptome profiles of sporulating vs non-sporulating cells, within an isogenic culture were compared. RNA was isolated from endospore containing cells which were separated from non-spore forming cells using buoyant density gradient centrifugation within an isogenic culture (details in Veenin...
ORGANISM(S): Bacillus subtilis 
2010-05-25 | E-GEOD-9266 | biostudies-arrayexpress
UnknownAnalysis of a cell-free DNA-based cancer screening cohort links fragmentomic profiles, nuclease levels, and plasma DNA concentrations.
Not available
S-EPMC11789642 | biostudies-literature
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