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TranscriptomicsTranscription profiling of S. cerevisiae ribosomal protein knockouts
Duplicated genes escape gene loss by conferring a dosage benefit or evolving diverged functions. The yeast Saccharomyces cerevisiae contains many duplicated genes encoding ribosomal proteins. Prior studies have suggested that these duplicated proteins are functionally redundant and affect cellular...
ORGANISM(S): Saccharomyces cerevisiae 
2008-06-16 | E-GEOD-8761 | biostudies-arrayexpress
TranscriptomicsGLA and profiling of proteasome, Spt23 and Mga2
The proteasome can regulate transcription through proteolytic processing of transcription factors and via gene locus binding, but few targets of proteasomal regulation have been identified. Using genome-wide location analysis and transcriptional profiling in Saccharomyces cerevisiae, we have establ...
ORGANISM(S): Saccharomyces cerevisiae 
2006-02-28 | E-GEOD-4272 | biostudies-arrayexpress
TranscriptomicsRibosome profiling of wild-type and loc1- cells in S. cerevisiae
We performed ribosome profiling of wild-type and loc1- cells. We found that approximately 1500 genes exhibit increased translational efficiencies in the absence of Loc1, indicating that Loc1 is required for their translational repression. Examination of translational efficiencies by comparing ribos...
ORGANISM(S): Saccharomyces cerevisiae 
2014-01-01 | E-GEOD-34438 | biostudies-arrayexpress
TranscriptomicsGenome-wide analyses of Loc1, Puf6, and Khd1
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Saccharomyces cerevisiae 
2014-01-01 | E-GEOD-34534 | biostudies-arrayexpress
TranscriptomicsGenomic analyses of Loc1, Puf6, and Khd1 binding patterns and transcriptional effects
We performed ChIP-chip of Loc1, Puf6, and Khd1 in order to determine the genetic loci they bind. We repeated these experiments with lighter fixation in the presence and absence of RNase to determine whether these associations are via DNA or RNA (analysis shows that they associate with the loci via ...
ORGANISM(S): Saccharomyces cerevisiae 
2014-01-01 | E-GEOD-34245 | biostudies-arrayexpress
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