Kong R R - OmicsDI

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Unknown (11490)
Proteomics (198)
Transcriptomics (115)
Genomics (109)
Metabolomics (32)
Models (2)
Other (1)

Organisms

Homo sapiens (218)
Mus musculus (85)
Arabidopsis thaliana (9)
Drosophila melanogaster (5)
Rattus norvegicus (5)
Macaca mulatta (3)
Zea mays (3)
Trypanosoma brucei (3)
Cucumis sativus (2)
Hordeum vulgare subsp. vulgare (2)
Saccharomyces cerevisiae (2)
Danio rerio (2)
Anaerobutyricum hallii DSM 3353 (2)
Azumapecten farreri (2)
Butyrivibrio fibrisolvens DSM 3071 (2)
Cryptomys hottentotus hottentotus (1)
Punica granatum (1)
Trypanosoma brucei brucei (1)
Lolium perenne (1)
synthetic construct (1)
Nasonia vitripennis (1)
Salmonella enterica subsp. enterica serovar Typhimurium (1)
Plasmodium falciparum (1)
Escherichia coli (1)
Sus scrofa (1)
Caenorhabditis elegans (1)
Gallus gallus (1)
Porphyromonas gingivalis W83 (1)
Rattus rattus (1)
gut metagenome (1)

Organisms

Homo sapiens (11)
Mus musculus (5)
Drosophila melanogaster (3)
Reishia clavigera (1)
Corynebacterium glutamicum (1)
Sus scrofa (1)

Repository

pride (167)
biostudies-arrayexpress (123)
EGA (72)
ENA (30)
MetaboLights (29)
iProX (18)
MassIVE (8)
GNPS (3)
BioModels (2)
jPOST (2)
PeptideAtlas (2)
GPMDB (1)

Tissue

Cell culture (27)
Epithelial cell (13)
Blood plasma (6)
Colon (6)
Early embryonic cell (6)
Brain (5)
Liver (5)
Lung (5)
Blood cell (4)
Blood serum (4)
Heart (4)
Hepatocyte (4)
Kidney (4)
Testis (4)
Blood platelet (3)
Breast (3)
Intervertebral disc (3)
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Leaf (3)
Pancreas (3)
Permanent cell line cell (3)
Shoot (3)
Spleen (3)
Stem cell (3)
T cell (3)
Whole body (3)
Male Reproductive System (2)
Blood (2)
Bone cell (2)
Byssus (2)

Disease

Disease free (8)
Breast cancer (7)
Malignant neoplasm of ovary (4)
Acute leukemia (3)
Osteosarcoma (3)
Colitis (2)
Colon cancer (2)
Liver cancer (2)
Pancreatic cancer (2)
Not Available (1)
Atherosclerosis (1)
Bone osteosarcoma (1)
Bowel dysfunction (1)
Brain glioblastoma multiforme (1)
COVID-19 (1)
Cholangiocarcinoma (1)
Echinococcosis (1)
Glaucoma (1)
Hepatocellular carcinoma (1)
Lung carcinoma (1)
Ovary epithelial cancer (1)
Pancreatic ductal adenocarcinoma (1)
Peripartum cardiomyopathy (1)
Pulmonary neuroendocrine tumor (1)
Schmid metaphyseal chondrodysplasia (1)
Skin cancer (1)
Skin melanoma (1)
Tauopathy (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (167)
Shotgun proteomics (67)
Bottom-up proteomics (52)
Data-dependent acquisition (34)
Affinity purification coupled with mass spectrometry proteomics (19)
Mass spectrometry (18)
Gel-based experiment (12)
Mass spectrometry assay (10)
Data-independent acquisition (9)
Top-down proteomics (8)
SWATH MS (7)
All-ion fragmentation (4)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
DiaPASEF (3)
SRM/MRM (3)
Illumina HiSeq 2000 (2)
ILLUMINA, Illumina HiSeq 4000, Illumina HiSeq 2500 (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
NMR spectroscopy (1)
Affinity proteomics (1)
Glycoproteomics (1)
Mass spectrometry imaging (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (8)
Liquid Chromatography MS - positive - reverse phase (7)
Illumina NovaSeq 6000 (5)
DNBSEQ-G400 (4)
Illumina HiSeq 4000 (4)
Liquid Chromatography MS - negative - hilic (4)
Liquid Chromatography MS - positive - hilic (4)
BGISEQ-500 (3)
Orbitrap Fusion (3)
HPC cluster Lobo (2)
DNBSEQ-T7 (2)
Illumina HiSeq 2500 (2)
Illumina HiSeq 2000 (2)
Q Exactive (2)
Q Exactive HF (2)
TripleTOF 6600 (2)
DNBSEQ-G400 FAST (1)
Fluidigm C1 (1)
Linux computer (1)
Linux Beowulf cluster; AMD Opteron Linux Beowulf cluster; AMD Opteron 6168 (1)
TruSeq RNA Sample Preparation Kit (Illumina) (1)
Rneasy Plant Mini Kit (Qiagen) (1)
N/A (1)
NextSeq 2000 (1)
NextSeq 500 (1)
MicrOTOF-Q II (1)
Instrument (1)
LTQ Orbitrap (1)
Orbitrap Fusion Lumos (1)
Q Exactive HF-X (1)

Publication Date

2025 (49)
2026 (39)
2024 (38)
2023 (33)
2022 (28)
2015 (27)
2021 (25)
2014 (20)
2020 (14)
2013 (13)
2012 (13)
2011 (10)
2018 (9)
2016 (9)
2010 (7)
2019 (6)
2009 (4)
2008 (4)
2017 (2)
2007 (2)
2006 (1)
2005 (1)

UNIPROT ID/AC

A0A024R563 (2)
A0A024R8H9 (2)
A0A024RAN2 (2)
A0A024RC46 (2)
A0A075B6P5 (2)
A0A087WT59 (2)
A0A087WTX5 (2)
A0A087WVW2 (2)
A0A087WVZ5 (2)
A0A087WWA5 (2)
A0A087WXI0 (2)
A0A087WYL9 (2)
A0A087X130 (2)
A0A087X1S3 (2)
A0A087X1V9 (2)
A0A087X232 (2)
A0A0A0MS07 (2)
A0A0A0MS51 (2)
A0A0A0MSA7 (2)
A0A0B4J1V0 (2)
A0A0C4DG89 (2)
A0AV96 (2)
A0AVF1 (2)
A0AVT1 (2)
A0FGR8 (2)
A0FGR8-2 (2)
A0FGR8-6 (2)
A0M8Q6 (2)
A0MZ66 (2)
A0N5G5 (2)

ENSEMBL ID

ENSG00000170477 (2)
ENSG00000214897 (2)
ENSG00000229353 (2)
ENSG00000247315 (2)
ENSG00000147251 (1)
ENSG00000204131 (1)

CHEBI ID

CHEBI:15756 (8)
CHEBI:30769 (8)
CHEBI:6650 (8)
CHEBI:15354 (7)
CHEBI:15741 (7)
CHEBI:16704 (7)
CHEBI:17368 (7)
CHEBI:30915 (7)
CHEBI:15428 (6)
CHEBI:15891 (6)
CHEBI:16015 (6)
CHEBI:16027 (6)
CHEBI:16196 (6)
CHEBI:16335 (6)
CHEBI:16566 (6)
CHEBI:16755 (6)
CHEBI:16919 (6)
CHEBI:17191 (6)
CHEBI:17687 (6)
CHEBI:17750 (6)
CHEBI:18012 (6)
CHEBI:18132 (6)
CHEBI:18183 (6)
CHEBI:28875 (6)
CHEBI:30805 (6)
CHEBI:30832 (6)
CHEBI:33508 (6)
CHEBI:36274 (6)
CHEBI:7916 (6)
CHEBI:15584 (5)

Metabolite Name

Citric acid (6)
Uridine (6)
Dodecanoic acid (5)
Ornithine (5)
Succinic acid (5)
3-Hydroxybutyric acid (4)
Acetic acid (4)
Adenosine (4)
Alanine (4)
Benzoic acid (4)
Cholesterol (4)
Creatine (4)
Fumaric acid (4)
Glyceraldehyde (4)
Glycine (4)
Guanine (4)
Hypoxanthine (4)
Isoleucine (4)
L-Asparagine (4)
L-Tyrosine (4)
Leucine (4)
Linoleic acid (4)
Methylsuccinic acid (4)
Myristic acid (4)
Oleic acid (4)
Palmitic acid (4)
Tyrosine (4)
Urea (4)
Xanthine (4)
3-Hydroxyisovaleric acid (3)

First Public Date

2024 (6)
2022 (5)
2026 (4)
2023 (4)
2025 (3)
2014 (3)
2021 (2)
2017 (2)
2020 (1)

Modelling Approach

Constraint-based model (1)
Ordinary differential equation model (1)

Lab affiliation

School of Biomedical Sciences and Department of Pathology, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Pokfulam Road, Hong Kong, P. R. China (3)
State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China (3)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria (2)
Department of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Parkville, Victoria, Australia. (2)
Faculty of Biology Technion - Israel Institute of Technology Haifa, Israel (2)
Institut für Mikrobiologie, Universität Greifswald, Felix-Hausdorff-Str. 8, 17489 Greifswald (2)
Mayo Clinic (2)
Professor and Chair of Chemical Biology, Peking-Tsinghua Center for Life Sciences Peking University, Beijing, China. Associate Editor, ACS Chemical Biology (2)
Professor and Chair of Chemical Biology, Peking-Tsinghua Center for Life Sciences Peking University, Beijing, China. Executive Editor, ACS Chemical Biology (2)
School of Biomedical Sciences, The University of Hong Kong (2)
School of Optometry, The Hong Kong Polytechnic University (2)
Shanghai Tenth People's Hospital, Tongji University School of Medicine (2)
State Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing, Jiangsu,China. (2)
The University of Hong Kong (2)
Vetsuisse Faculty (VET), Department of Molecular Mechanisms of Disease, University of Zurich (UZH) (2)
Wellcome Centre for Cell-Matrix Research, Division of Cell-Matrix Biology and Regenerative Medicine, School of Biological Sciences, Faculty of Biology Medicine and Health, The University of Manchester, Manchester Academic Health Science Centre, Manchester, UK. (2)
1 Biomolecular Mass Spectrometry and Proteomics Group, Utrecht Institute for Pharmaceutical Science, Utrecht University, Utrecht, The Netherlands. 2 Netherlands Proteomics Center, Padualaan 8, 3584 CH Utrecht, The Netherlands 3 Mass Spectrometry and Proteomics Facility, The Netherlands Cancer Institute, 1066 CX Amsterdam, The Netherlands (1)
1. School of Life Sciences, The Chinese University of Hong Kong, Hong Kong SAR, China 2. Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong SAR, China (1)
1.Wellcome Centre for Cell-Matrix Research, Division of Cell-Matrix Biology and Regenerative Medicine, School of Biological Sciences, Faculty of Biology Medicine and Health, The University of Manchester, Manchester Academic Health Science Centre, Manchester, UK. (1)
1Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China 2Academy of Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China 3Synthetic and Functional Biomolecules Center, Beijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China (1)
ARC Centre of Excellence in Plant Energy Biology, School of Molecular Sciences, The University of Western Australia (1)
Academy Professor, Turku Centre for Biotechnology, University of Turku and Abo Akademi University, Turku, Finland (1)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
Anhui Medical University (1)
Assistant Professor DEPARTMENT OF OBSTETRICS & GYNAECOLOGY Faculty of Medicine The University of HOng Kong (1)
Assistant Professor, School of biomedical Sciences, Faculty of Medicine, The University of Hong Kong (1)
Assistant Professor, Dept of Obstetrics & Gynaecology, Faculty of Medicine, The Ubiversity of Hong Kong (1)
Assistant Professor, School of Biomedical Sciences, Faculty of Medicine, The University of Hong Kong, HK SAR (1)
Assistant Profssor, School of Biomedical Sciences and Department of Pathology, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Pokfulam Road, Hong Kong, P. R. China (1)
Associate Professor Department of Biological Sciences University of Denver (1)

IsPrivate

False (2)

Submitter Keywords

Manuscript Accepted (1)

Classification

bacteria (1)

Study type

Transcription profiling by array (74)
RNA-seq of coding RNA (24)
ChIP-seq (4)
Comparative genomic hybridization by array (3)
Other (3)
RNA-seq of coding RNA from single cells (3)
Transcription profiling by RT-PCR (2)
DNA-seq (2)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
High-throughput sequencing (1)
Methylation profiling by array (1)
Proteomic profiling by array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2025 (1905)
2022 (1510)
2023 (1388)
2024 (1387)
2021 (1130)
2020 (859)
2019 (646)
2018 (518)
2016 (408)
2017 (391)
2015 (306)
2026 (298)
2014 (271)
2013 (144)
2012 (118)
2011 (106)
2010 (85)
2009 (48)
2008 (25)
2007 (19)
2005 (14)
2006 (8)
2000 (8)
2003 (7)
2004 (4)
2002 (3)
2001 (2)
1999 (2)
1998 (2)
1996 (1)

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Shell protein plasticity assists oyster larval shell formation in adverse carbonate chemistry

Shell proteins were extracted from larval Hong Kong oysters (Magallana hongkongensis) after exposure to control (pH 8.1) and adverse carbonate chemistry (pH 7.4).

ORGANISM(S): Crassostrea hongkongensis

2025-12-17 | PXD046805 | Pride

Cost of Cerebellar Ataxia in Hong Kong: A Retrospective Cost-of-Illness Analysis.

Not available

S-EPMC7380245 | biostudies-literature

Efficacy of the integrative Body-Mind-Spirit group intervention for improving quality of life in parent-child dyads adjusting to atopic dermatitis: protocol for a randomised controlled trial.

Not available

S-EPMC8928280 | biostudies-literature

Detection of pathogenic <i>Leptospira</i> spp. in peridomestic <i>Rattus norvegicus</i> in Hong Kong.

Not available

S-EPMC12354790 | biostudies-literature

Myopia Management in Hong Kong.

Not available

S-EPMC11818885 | biostudies-literature

R-spodin2 enhances canonical Wnt signaling to maintain the stemness of glioblastoma cells.

Not available

S-EPMC6180579 | biostudies-literature

Long-Term Spatio-Temporal Trends of Organotin Contaminations in the Marine Environment of Hong Kong.

Not available

S-EPMC4866715 | biostudies-literature

Changes in local travel behaviour before and during the COVID-19 pandemic in Hong Kong.

Not available

S-EPMC7877214 | biostudies-literature

Ho2019 - Mathematical models of transmission dynamics and vaccine strategies in Hong Kong during the 2017-2018 winter influenza season (Simple)

This is the simple version of the two mathematical models presented by Ho et al. It is a model comprised of simple ordinary differential equations describing the overall epidemic dynamics of influenza infection in the 2017-2018 winter influenza season in Hong Kong.

2024-09-02 | BIOMD0000000851 | BioModels

An R package for analyzing and modeling ranking data.

Not available

S-EPMC3665468 | biostudies-literature

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11947 Results

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