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TranscriptomicsTranscription profiling of Arabidopsis roots from wild type and stop1 mutant plants treated with Al or low pH
Comparison of stop1 mutant vs. wild type treated with Al or low pH, and gene expression responses to rhizotoxic ions (Al, low pH) in Arabidopsis roots.
ORGANISM(S): Arabidopsis thaliana 
2009-05-04 | E-MEXP-1908 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis roots after treatment with rhizotoxic ions Al, Cu, Cd and NaCl
Comparison of gene expression responses to rhizotoxic ions (Al, Cu, Cd and NaCl) in Arabidopsis roots.
ORGANISM(S): Arabidopsis thaliana 
2009-05-04 | E-MEXP-1907 | biostudies-arrayexpress
ProteomicsProteomic QSAR analysis of calpain substrate specificity
Calpains are intracellular Ca2+-regulated cysteine proteases that are essential for various cellular functions. Mammalian conventional calpains (calpain-1 and calpain-2) modulate the structure and function of their substrates by limited proteolysis; however, their substrate specificity remains uncle...
ORGANISM(S): Bos taurus (Bovine) Oryctolagus cuniculus algirus Mus musculus (Mouse) Homo sapiens (Human) Gallus gallus (Chicken) Ovis aries Sus scrofa domesticus (domestic pig) Rattus norvegicus (Rat) 
2016-07-19 | PXD002532 | Pride
Calpain Pls Qsar Substrate specificity 
TranscriptomicsSTOP2 activated transcription in the stop1-mutant: STOP2-complemented lines (stop1-mutant with transformed STOP2) vs. stop1-mutant of Arabidopsis
Transcriptional profiling of genes recoverd by STOP2-complementation in the stop1-mutant (STOP2 expression is repressed in the stop1-mutant). The roots were exposed to Al and low pH stressed conditions, then genes recovered expression were analyzed. Goal is identifying the genes can be actevated the...
ORGANISM(S): Arabidopsis thaliana 
2013-10-21 | E-GEOD-45017 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis shoots and roots in response to exogenous H2O2 with differential kinetics
Arabidopsis plants (Col-0) were hydroponically grown for 10 days at 22°C under 30~40 μE·m−2·s−1 and continuous light conditions. Treatment with 100 mM H2O2 or sterile distilled water as mock control by spraying for shoot treatments, or dipping for root treatments. Relationship between treated and ha...
ORGANISM(S): Arabidopsis thaliana 
2019-06-01 | E-MTAB-4961 | biostudies-arrayexpress
TranscriptomicsVuDREB2A activated transcription in wild type Arabidopsis: VuDREB2A overexpressor lines vs. wild type Arabidopsis
Transcriptional profiling of Arabidopsis overexpressing VuDREB2A (full length/truncated) compared to wild type. Unstressed three week-old whole seedlings were used. Goal was to search the genes upregulated byVuDREB2A in Arabidopsis. Two-condition experiment, VuDREB2A (full length/truncated) overexpr...
ORGANISM(S): Arabidopsis thaliana 
2013-12-10 | E-GEOD-53113 | biostudies-arrayexpress
TranscriptomicsArabidopsis thaliana Col-0 Al stress 6hrs
Transcriptional profiling of roots in Arabidopsis Col-0 with 10 M-BM-5M AlCl3 6hrs vs w/o AlCl3 6hrs 10 M-BM-5M AlCl3 pH5.0 6hrs vs. noAlCl3 pH5.0 6hrs
ORGANISM(S): Arabidopsis thaliana 
2014-10-11 | E-GEOD-62238 | biostudies-arrayexpress
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