Koyama Y Y - OmicsDI

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Unknown (960)
Transcriptomics (16)
Proteomics (13)
Metabolomics (10)

Organisms

Arabidopsis thaliana (10)
Homo sapiens (7)
Andropogon gerardi (6)
Bacteria (6)
Bartonella quintana JK 31 (6)
Canis lupus familiaris (6)
Cnidaria (6)
Ensifer adhaerens (6)
Human alphaherpesvirus 1 strain 17 (6)
Human alphaherpesvirus 1 strain KOS (6)
Human betaherpesvirus 5 (6)
Human herpesvirus 2 strain 186 (6)
Mesocricetus auratus (6)
Miscanthus x giganteus (6)
Mus musculus (6)
Panicum virgatum (6)
Platyhelminthes (6)
Pseudomonas aeruginosa PA103 (6)
Rabies virus Nishigahara RCEH (6)
Rattus norvegicus (6)
Rattus rattus (6)
Rhodococcus jostii RHA1 (6)
Rhodopseudomonas palustris (6)
Shigella (6)
Sorghastrum nutans (6)
Streptococcus dysgalactiae subsp. equisimilis SK1249 (6)
Mus musculus (4)
Thermus thermophilus HB8 (1)
Vitis vinifera (1)
Solanum lycopersicum (1)

Repository

biostudies-arrayexpress (17)
MetaboLights (9)
jPOST (7)
pride (6)
GNPS (1)

Tissue

Brain (2)
Cell culture (1)
Microglial cell (1)
Preadipocyte (1)
Stem cell (1)

Disease

Gliosarcoma (1)
Adenocarcinoma (1)
Brain cancer (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass spectrometry (8)
Mass Spectrometry (6)
Bottom-up proteomics (2)
Shotgun proteomics (2)
Mass spectrometry assay (1)
Data-dependent acquisition (1)
Mass spectrometry imaging (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (6)
Illumina NovaSeq 6000 (1)
LTQ FT (1)
MaXis (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2023 (7)
2013 (5)
2021 (4)
2024 (4)
2026 (3)
2014 (2)
2011 (2)
2009 (2)
2006 (2)
2016 (2)
2019 (1)
2012 (1)
2010 (1)
2015 (1)
2020 (1)
2018 (1)
2017 (1)

CHEBI ID

CHEBI:35038 (3)
CHEBI:16359 (3)
CHEBI:28865 (3)
CHEBI:195271 (2)
CHEBI:143757 (2)
CHEBI:182784 (2)
CHEBI:143745 (2)
CHEBI:139138 (2)
CHEBI:34494 (2)
CHEBI:173703 (2)
CHEBI:64563 (2)
CHEBI:15603 (2)
CHEBI:75342 (2)
CHEBI:27997 (2)
CHEBI:16856 (2)
CHEBI:17895 (2)
CHEBI:34687 (2)
CHEBI:17750 (2)
CHEBI:73858 (2)
CHEBI:16235 (2)
CHEBI:80774 (2)
CHEBI:17191 (2)
CHEBI:30769 (2)
CHEBI:27432 (2)
CHEBI:181874 (1)
CHEBI:15375 (1)
CHEBI:195266 (1)
CHEBI:85465 (1)
CHEBI:125449 (1)
CHEBI:195267 (1)

Metabolite Name

Tris(2-butoxyethyl) phosphate (3)
Cholic acid (3)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
Dibutyl phthalate (DBP) (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
Lyso-PC(16:0) (2)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
Monoolein (2)
Succinate (2)
Taurocholic acid (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
9(10)-EpOME (2)
Elaidic acid (2)
Methionine (2)
Guanine (2)
NCGC00168953-02_C47H76O17_(3beta,5xi,9xi,22beta)-22,24-Dihydroxyolean-12-en-3-yl 6-deoxy-alpha-L-mannopyranosyl-(1->2)-alpha-L-arabinopyranosyl-(1->2)-beta-D-glucopyranosiduronic acid (1)
Sodium taurochenodeoxycholate (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
4-Aminobutyric acid betaine (1)
Glutaryl-carnitine (1)
3beta-Hydroxy-5-cholenoic acid (1)
N-Methyl-proline (1)
Lyso PC (22:6) (1)
Methyl (3R,4R,5R)-5-[(2R,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(E)-3-phenylprop-2-enoyl]oxyoxan-2-yl]oxy-3,4-dihydroxycyclohexene-1-carboxylate (1)
Propanoic acid, 3,3'-thiobis-, didodecyl ester (1)
2-((R)-4-((3R,5S,7S,8R,9S,10S,13R,14S,17R)-3,7-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanamido)ethane-1-sulfonic acid (1)
LU052302 Acetyl tributyl citrate|tributyl 2-acetyloxypropane-1,2,3-tricarboxylate (1)

Study type

Transcription profiling by array (14)
Cell line - High-throughput sequencing (1)
RNA-seq of coding RNA (1)

Release Date

2022 (110)
2025 (108)
2023 (103)
2024 (101)
2021 (100)
2020 (61)
2019 (59)
2018 (54)
2017 (51)
2016 (38)
2015 (28)
2014 (26)
2013 (24)
2012 (19)
2026 (19)
2011 (14)
2010 (12)
2007 (11)
2009 (9)
2008 (7)
2006 (6)
2005 (5)
2001 (5)
2002 (2)
1999 (2)
2004 (1)
2003 (1)
1997 (1)

Lab affiliation

Calpain Project Department of Advanced Science for Biomolecules Igakuken (Tokyo Metropolitan Institute of Medical Science) 2-1-6 Kamikitazawa, Setagaya-ku Tokyo 156-8506, Japan (1)
College of Biology and the Environment, Nanjing Forestry University (1)
Department of Biology University of Copenhagen Denmark (1)
Department of Biology, University of Copenhagen, 2100 Copenhagen O, Denmark (1)
Medical Proteomics Laboratory, The Institute of Medical Science, The University of Tokyo, Japan (1)
UNIL | University of Lausanne Faculty of Biology and Medicine Department of Biomedical Sciences Rue du Bugnon 7 CH-1005 Lausanne (1)

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Transcription profiling of Arabidopsis roots after treatment with rhizotoxic ions Al, Cu, Cd and NaCl

Comparison of gene expression responses to rhizotoxic ions (Al, Cu, Cd and NaCl) in Arabidopsis roots.

ORGANISM(S): Arabidopsis thaliana

2009-05-04 | E-MEXP-1907 | biostudies-arrayexpress

"Two-devices-in-one-channel method" in a Roux-en-Y patient.

Not available

S-EPMC6003806 | biostudies-literature

Using the Montgomery-Koyama-Smith equation to calculate the stomatal area per unit lamina area for 12 Magnoliaceae species.

Not available

S-EPMC11688533 | biostudies-literature

Endothelin-1 stimulates expression of cyclin D1 and S-phase kinase-associated protein 2 by activating the transcription factor STAT3 in cultured rat astrocytes.

Not available

S-EPMC6422083 | biostudies-literature

Continuing versus withdrawing ixekizumab treatment in patients with axial spondyloarthritis who achieved remission: efficacy and safety results from a placebo-controlled, randomised withdrawal study (COAST-Y).

Not available

S-EPMC8292566 | biostudies-literature

Transcription profiling of Arabidopsis roots from wild type and stop1 mutant plants treated with Al or low pH

Comparison of stop1 mutant vs. wild type treated with Al or low pH, and gene expression responses to rhizotoxic ions (Al, low pH) in Arabidopsis roots.

ORGANISM(S): Arabidopsis thaliana

2009-05-04 | E-MEXP-1908 | biostudies-arrayexpress

Grape skin transcriptome in the berries grown on the vine treated with exogenous abscisic acid

The experiment was conducted using grapevines of Cabernet Sauvignon grown in a field. At veraison, the clusters in the vines were sprayed with a 400 mgl-1(+)-abscisic acid (ABA) solution. The ABA treated berries and non-treated berries (control) were harvested at 14 and 28 days after veraison and pe...

ORGANISM(S): Vitis vinifera

2011-08-26 | E-GEOD-31664 | biostudies-arrayexpress

Estimation of material parameters based on precipitate shape: efficient identification of low-error region with Gaussian process modeling.

Not available

S-EPMC6823509 | biostudies-literature

Disruption of the l-DOPA Receptor Gpr143/OA1-Gene in Mice Creates a Unique Mixed Psychosis-Like Phenotype.

Not available

S-EPMC12784213 | biostudies-literature

Localization of putative pituitary stem/progenitor cells in female dairy cattle.

Not available

S-EPMC8349808 | biostudies-literature