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Unknown (13032)
Genomics (556)
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Proteomics (215)
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Multiomics (3)
Methylation profiling (2)
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Organisms

Mus musculus (135)
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Klebsiella pneumoniae (5)
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Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (2)
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Organisms

Mus musculus (177)
Klebsiella pneumoniae (56)
Homo sapiens (23)
Klebsiella pneumoniae subsp. pneumoniae (7)
soil metagenome (5)
Talaromyces aculeatus (3)
Penicillium lanosocoeruleum (3)
Penicillium brevicompactum AgRF18 (3)
Penicillium bilaiae (3)
Penicillium expansum (3)
Bacteroides fragilis 638R (2)
Klebsiella pneumoniae phage (2)
Klebsiella quasipneumoniae subsp. similipneumoniae (2)
Lactiplantibacillus plantarum (2)
Drosophila melanogaster (2)
mouse gut metagenome (2)
Klebsiella pneumoniae KP-11 (1)
Klebsiella pneumoniae KP-7 (1)
Salinivibrio sp. KP-1 (1)
Klebsiella pneumoniae KP-1 (1)
Bracteacoccus sp. KP-13A (1)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (1)
Leminorella grimontii (1)
Exiguobacterium sp. BMC-KP (1)
Kappaphycus alvarezii (1)
Klebsiella pneumoniae phage KP-ZS4 (1)
fungal endophyte (1)
Geobacter sulfurreducens (1)
Klebsiella (1)
Musculus (1)

Repository

ENA (479)
biostudies-arrayexpress (234)
pride (188)
geo (109)
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Tissue

Cell culture (35)
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Disease

Acute leukemia (6)
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Pancreatic ductal carcinoma (1)
Neurological dysfunction (1)
Stomach cancer (1)
Brain glioblastoma multiforme (1)
Lung adenocarcinoma (1)
Pancreatic ductal adenocarcinoma (1)
Neuroblastoma (1)
Melanoma (1)

Technology Type

Mass Spectrometry (188)
Shotgun proteomics (120)
Bottom-up proteomics (28)
Affinity purification coupled with mass spectrometry proteomics (24)
Data-dependent acquisition (12)
Mass spectrometry (10)
SWATH MS (8)
Gel-based experiment (8)
Data-independent acquisition (4)
SRM/MRM (4)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Top-down proteomics (3)
Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
NMR (1)
Metaproteomics (1)
Mass spectrometry imaging (1)
Affinity proteomics (1)
All-ion fragmentation (1)

Instrument Platform

Q Exactive (12)
Liquid Chromatography MS - negative - reverse phase (5)
Illumina NovaSeq 6000 (4)
Orbitrap Fusion Lumos (4)
LTQ Orbitrap Elite (3)
Liquid Chromatography MS - positive - reverse phase (3)
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LMJ-SSP/ESI MS (Imaging MS) (1)
SYNAPT HDMS (Waters) (1)
5975C Series GC/MSD (Agilent) (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - alternating - hilic (1)

Publication Date

2010 (67)
2021 (55)
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2026 (34)
2011 (34)
2015 (33)
2022 (31)
2016 (30)
2025 (30)
2019 (29)
2020 (25)
2023 (25)
2012 (25)
2017 (22)
2013 (21)
2014 (19)
2018 (17)
2008 (14)
2009 (12)
2005 (5)
2003 (2)
2007 (1)
2006 (1)
2004 (1)

UNIPROT ID/AC

F2QZ59 (1)
C4QYV5 (1)
F2QWB6 (1)
C4R805 (1)
C4R0F7 (1)
C4R3Y5 (1)
C4R7E1 (1)
C4R7L4 (1)
C4R343 (1)
F2R014 (1)
F2QUP5 (1)
C4QY33 (1)
C4R3M7 (1)
F2QWU0 (1)
C4R0X1 (1)
C4R1V5 (1)
C4R5T2 (1)
C4QVW3 (1)
C4QVW0 (1)
C4QXK8 (1)
C4QWX8 (1)
C4QVB5 (1)
C4QV74 (1)
C4R1P7 (1)
C4QZN1 (1)
C4QY22 (1)
C4R057 (1)
C4R1X5 (1)
C4R8M8 (1)
C4R0Q7 (1)

ENSEMBL ID

ENSG00000147251 (1)
ENSG00000170477 (1)

CHEBI ID

CHEBI:15678 (1)
CHEBI:16935 (1)
CHEBI:16646 (1)
CHEBI:15689 (1)
CHEBI:10211 (1)
CHEBI:5743 (1)
CHEBI:6163 (1)
CHEBI:2777 (1)
CHEBI:53742 (1)
CHEBI:59085 (1)
CHEBI:80453 (1)
CHEBI:78687 (1)
CHEBI:37393 (1)
CHEBI:78682 (1)
CHEBI:27676 (1)
CHEBI:62912 (1)
CHEBI:52222 (1)
CHEBI:18634 (1)
CHEBI:76910 (1)
CHEBI:29089 (1)
CHEBI:17667 (1)
CHEBI:53022 (1)
CHEBI:59087 (1)
CHEBI:15431 (1)
CHEBI:31132 (1)
CHEBI:50586 (1)
CHEBI:27859 (1)
CHEBI:62213 (1)
CHEBI:28885 (1)
CHEBI:62345 (1)

Metabolite Name

PC(18:2/18:2) (2)
PC(16:0/0:0) (2)
Linoleic acid (2)
TAG 53:6 (C15:0/C16:0/C22:6) (1)
TAG 59:12 (15:0/22:6/22:6) (1)
TAG 55:7 (15:0/18:1/22:6) (1)
TAG 55:6 (15:0/18:0/22:6) (1)
TAG 55:1 (15:0/18:1/22:0) (1)
TAG 51:5 (15:0/18:1/18:4) (1)
TAG 51:4 (15:0/18:1/18:3) (1)
TAG 51:3 (15:0/18:1/18:2) (1)
TAG 51:2 (15:0/18:1/18:1) (1)
TAG 49:1 (15:0/16:0/18:1) (1)
TAG 48:1 (14:0/16:0/18:1) (1)
TAG 48:1 (15:0/15:0/18:1) (1)
TAG 47:1 (14:0/15:0/18:1) (1)
Biliverdin delta (1)
Biliverdin beta (1)
Crenarchaeol (1)
Gondoyl-linoleate (1)
Linolenyl behenate (1)
Behenyl linolenate (1)
CL(1'-[18:0/18:2(9Z,12Z)],3'-[20:0/16:0]) (1)
CL(1'-[20:4(5Z,8Z,11Z,14Z)/18:0],3'-[18:1(9Z)/18:1(9Z)]) (1)
CL(1'-[18:1(9Z)/16:0],3'-[18:0/18:1(9Z)]) (1)
CL(1'-[18:1(9Z)/20:4(5Z,8Z,11Z,14Z)],3'-[18:2(9Z,12Z)/18:0]) (1)
CL(1'-[18:1(9Z)/18:1(9Z)],3'-[18:1(9Z)/18:1(9Z)]) (1)
CL(1'-[18:2(9Z,12Z)/18:0],3'-[18:1(9Z)/16:0]) (1)
CL(1'-[18:2(9Z,12Z)/18:2(9Z,12Z)],3'-[18:1(9Z)/16:0]) (1)
CL(1'-[16:0/18:1(11Z)],3'-[16:0/18:1(11Z)]) (1)

First Public Date

2024 (83)
2025 (71)
2026 (51)
2023 (51)
2021 (38)
2022 (35)
2017 (34)
2020 (33)
2019 (24)
2018 (19)
2014 (18)
2016 (12)
2015 (6)
2013 (4)

Modelling Approach

Ordinary differential equation model (2)
Physiologically based pharmacokinetic model (1)

Study status

Completed (1)

Lab affiliation

Department of Chemistry, Imperial College London, Molecular Sciences Research Hub, London, W12 0BZ, UK The Francis Crick Institute, London, NW1 1AT, UK (4)
Department of Proteomics and Signal Transduction, Max-Planck-Institute of Biochemistry, Munich, Germany (4)
Kyung Hee University (3)
Biological Science Research Center, Southwest University, Chongqing, 400715, China (3)
City University of Hong Kong (3)
Naval Research Laboratory (3)
The Gene Lay Institute of Immunology and Inflammation Harvard Medical School and Brigham and Women's Hospital (2)
Professor and Deputy Director Center for systems biology and molecular medicine Yenepoya Research Center Yenepoya (Deemed to be University) Mangalore, India (2)
Department of Medical Biotechnology and Laboratory Science College of Medicine, Chang Gung University, Taoyuan, Taiwan (2)
Department of Life Science (2)
Institute of Biological Chemistry, Academia Sinica, Taipei, 115201, Taiwan Institute of Biochemical Sciences, National Taiwan University, Taipei, 106319, Taiwan International Institute for Sustainability with Knotted Chiral Meta Matter (SKCM2), Hiroshima University, Hiroshima, 739-8511, Japan (2)
Molecular Physiology & Biophysics, Wright Lab, University of Iowa, USA (2)
Aarhus University (2)
Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany (2)
Center for Cell Signaling Department of Biochemistry & Molecular Genetics University of Virginia, Charlottesville, VA, USA (2)
Lee Kong Chian School of Medicine, School of Biological Sciences, Nanyang Technological University, Singapore (2)
Second Hospital of Lanzhou University (1)
Jesper V. Olsen, Novo Nordisk Foundation Center for Protein Research, Faculty of Health & Medical Sciences, University of Copenhagen, Blegdamsvej 3B, DK-2200 Copenhagen, Denmark. (1)
Department of Biomedical Science and Technology, Kyung Hee Medical Science Research Institute, Kyung Hee University, Seoul, South Korea (1)
Department of New Biology, Daegu Gyeongbuk Institute of Science and Technology, Republic of Korea (1)
VIB Proteomics Core Ghent University VIB Proteomics Core VIB-UGent Center for Medical Biotechnology UGent Department of Biomolecular Medicine (lab head) (1)
NIH NCATS (1)
School of Biosciences (1)
Institute of Microbiology, ETH Zurich (1)
U.S. Army Medical Research Institute of Infectious Diseases, Frederick, Maryland, USA (1)
Université de Strasbourg, CNRS M3I/UPR9022, Inserm MIR/U1257, Strasbourg, France (1)
Professor, Environmental Science and Engineering Chair, Environmental Science and Engineering Program Biological and Environmental Science and Engineering Division KAUST Saudi Arabia (1)
Department of Chemistry, Imperial College London, Molecular Research Science Hub, 80 Wood Lane, London W12 0BZ, United Kingdom. The Francis Crick Institute, 1 Midland Road, London NW1 1AT, United Kingdom. (1)
Beth Israel Deaconess Medical Center, Harvard Medical School, Broad Institute (1)
1. Institute of Biological Chemistry, Academia Sinica, Taipei, Taiwan 2. Institute of Biochemical Sciences, National Taiwan University, Taipei, Taiwan (1)

Tags

pathogen (81)
pathogen:bacterium (77)
xref:PubMed:34135508 (7)
xref:PubMed:39243762 (5)
xref:PubMed:32571479 (4)
xref:PubMed:31744829 (4)
pathogen:virus (4)
xref:PubMed:37187743 (3)
xref:PubMed:42008781 (3)
xref:PubMed:41813904 (3)
xref:PubMed:41904944 (3)
xref:PubMed:36930718 (3)
xref:PubMed:38648067 (3)
xref:PubMed:32157212 (3)
xref:PubMed:39388266 (3)
xref:PubMed:37081148 (3)
xref:PubMed:27050947 (3)
xref:PubMed:41790934 (3)
xref:PubMed:38875320 (2)
xref:PubMed:34142094 (2)
xref:PubMed:24148319 (2)
xref:PubMed:26871576 (2)
xref:PubMed:22928052 (2)
xref:PubMed:42707650 (2)
xref:PubMed:35413274 (2)
xref:PubMed:24913165 (2)
xref:PubMed:37889752 (2)
xref:PubMed:37808628 (2)
xref:PubMed:37961185 (2)
xref:PubMed:39109824 (2)

Keyword

Preventive health (1)
Primary care (1)

IsPrivate

False (3)

Model Flag

Non Kinetic (1)

Classification

bacteria (77)
viruses (4)

Modification

15.994915 (3)
-18.010565 (2)
-17.026549 (2)
57.021464 (2)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (112)
ChIP-seq (45)
RNA-seq of coding RNA (25)
Unknown experiment type (16)
ChIP-chip by tiling array (12)
Methylation profiling by array (9)
Comparative genomic hybridization by array (5)
RNA-seq of non coding RNA (4)
Other (2)
RNA-seq of coding RNA from single cells (2)
Baseline (1)
DNA-seq (1)
Interventional (1)

Release Date

2022 (1461)
2021 (1337)
2023 (1278)
2025 (1226)
2024 (1141)
2020 (1034)
2019 (857)
2018 (769)
2017 (645)
2016 (626)
2015 (591)
2014 (458)
2013 (332)
2012 (286)
2011 (258)
2010 (234)
2026 (166)
2009 (154)
2008 (115)
2007 (77)
2006 (53)
2005 (36)
2004 (28)
2003 (24)
2002 (22)
2000 (17)
2001 (16)
1999 (11)
1998 (10)
1997 (4)

Location

United States (1)

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Whole genome sequencing and targeted metabolomics of multidrug-resistant Klebsiella pneumoniae KP21-10C

This study investigates multidrug-resistant Klebsiella pneumoniae KP21-10C using whole genome sequencing and targeted energy metabolomics. Genomic sequencing data were generated to characterize the bacterial genome, and targeted LC-MS/MS metabolomics was performed to quantify energy metabolism-relat...

2026-06-25 | MTBLS14858 | MetaboLights

Klebsiella pneumoniae KP-1

Klebsiella pneumoniae KP-1 Genome sequencing

PRJNA212238 | ENA

Salinivibrio sp. KP-1

Salinivibrio halophilus (Strain KP-1) sp. nov. Genome sequencing and assembly

PRJNA279830 | ENA

Exiguobacterium sp. BMC-KP

Exiguobacterium sp. BMC-KP Genome sequencing and assembly

PRJNA289685 | ENA

Klebsiella pneumoniae strain:KP-2210X

Klebsiella pneumoniae strain:KP-2210X Genome sequencing

PRJNA1309879 | ENA

Klebsiella pneumoniae strain:KP-JZ177

Klebsiella pneumoniae strain:KP-JZ177 Genome sequencing

PRJNA1299385 | ENA

Klebsiella pneumoniae strain:KP-JZ177

Klebsiella pneumoniae strain:KP-JZ177 Genome sequencing

PRJNA1299395 | ENA

Klebsiella pneumoniae strain:KP-7

Klebsiella pneumoniae strain:KP-7 Genome sequencing

PRJNA1118416 | ENA

Klebsiella pneumoniae strain:KP-JZ177

Klebsiella pneumoniae strain:KP-JZ177 Genome sequencing

PRJNA1299393 | ENA

Klebsiella pneumoniae strain:KP-JZ177

Klebsiella pneumoniae strain:KP-JZ177 Genome sequencing

PRJNA1299290 | ENA

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