Kpc - OmicsDI

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Mus musculus (169)
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Organisms

Mus musculus (263)
Klebsiella pneumoniae (239)
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Mus (2)
Serratia marcescens (2)
Enterobacter hormaechei (2)
Bacteria (2)
Klebsiella pneumoniae FCF3SP (1)
Klebsiella pneumoniae FCF1305 (1)
Klebsiella pneumoniae UHKPC17 (1)
Klebsiella pneumoniae UHKPC33 (1)
Klebsiella pneumoniae UHKPC61 (1)
Klebsiella pneumoniae DMC1097 (1)
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Repository

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Tissue

Cell culture (16)
Pancreas (6)
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Blood plasma (2)
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Skeletal muscle (2)
KPC (1)
Adipose tissue (1)
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Cell suspension culture (1)
Epithelial cell of exocrine pancreas (1)
Epithelial cell of pancreas (1)
Extracellular exosome assembly (1)
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Subcutaneous adipose tissue (1)
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Disease

Pancreatic cancer (8)
Pancreatic ductal adenocarcinoma (8)
Pancreatic ductal carcinoma (3)
Pancreatic endocrine carcinoma (1)
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Carcinoma (1)
Human cytomegalovirus infection (1)
Obesity (1)
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Technology Type

Mass Spectrometry (41)
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Top-down proteomics (3)
Affinity purification coupled with mass spectrometry proteomics (2)
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Mass spectrometry (1)
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SRM/MRM (1)

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Illumina HiSeq 2500 (3)
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2014 (2)
2016 (1)

CHEBI ID

CHEBI:28866 (1)
CHEBI:28941 (1)
CHEBI:30813 (1)
CHEBI:24548 (1)
CHEBI:25627 (1)
CHEBI:28822 (1)
CHEBI:25048 (1)
CHEBI:31009 (1)
CHEBI:17822 (1)
CHEBI:22660 (1)
CHEBI:17050 (1)
CHEBI:28875 (1)
CHEBI:28842 (1)
CHEBI:15428 (1)
CHEBI:6650 (1)
CHEBI:16196 (1)
CHEBI:16449 (1)
CHEBI:18012 (1)
CHEBI:78320 (1)
CHEBI:26806 (1)
CHEBI:15756 (1)
CHEBI:30769 (1)

Metabolite Name

Serine (2)
DG(20:5-3OH(5,6,15)/0:0/20:0) (1)
LysoPE(22:2/0:0) (1)
LysoPE(22:6/0:0) (1)
LysoPE(0:0/20:5) (1)
LysoPE(0:0/20:1) (1)
LysoPE(20:3/0:0) (1)
LysoPE(0:0/18:4) (1)
LysoPE(18:1/0:0) (1)
LysoPE(0:0/18:3) (1)
6-Hydroxyphenylpropionylglycine (1)
CPA(18:1/0:0) (1)
3-Hydroxyundecanoyl carnitine (1)
MG(18:3/0:0/0:0) (1)
Octadeca-9,11,13-trienoic acid (1)
Anhydroretinol (1)
11-Hexadecenal (1)
2-Dodecene (1)
4-Oxo-proline (1)
Methylcarbamodithioic acid (1)
MG(0:0/20:3/0:0) (1)
LysoPC(22:6/0:0) (1)
LysoPE(16:1/0:0) (1)
LysoPE(20:4/0:0) (1)
LysoPC(20:1/0:0) (1)
LysoPC(20:2/0:0) (1)
Dodec-9-enedioylcarnitine (1)
N-Myristoyl Aspartic acid (1)
2-Hydroxyundec-7-enoylcarnitine (1)
MG(P-18:0/0:0/0:0) (1)

First Public Date

2025 (144)
2024 (127)
2026 (105)
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2022 (100)
2021 (81)
2013 (68)
2020 (63)
2017 (62)
2019 (47)
2018 (29)
2016 (22)
2014 (13)
2015 (12)
2012 (1)

Classification

bacteria (414)

Study type

Transcription profiling by array (8)
RNA-seq of coding RNA (4)
ATAC-seq (1)
DNA-seq (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)

Release Date

2022 (214)
2025 (202)
2023 (195)
2021 (192)
2024 (173)
2020 (143)
2019 (123)
2018 (102)
2017 (72)
2016 (58)
2015 (56)
2014 (42)
2026 (17)
2013 (15)
2009 (14)
2012 (13)
2011 (12)
2010 (12)
2008 (7)
2007 (3)
2005 (2)
2004 (2)
2003 (2)
2006 (1)
2001 (1)

Lab affiliation

Sun Yat-sen University Cancer Center (SYSUCC) (4)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02215, USA (3)
CRUK -CRUK Scotland nstitute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (2)
Department of Physical Therapy University of Florida (2)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) School of Life Sciences Technical University Munich (TUM) Gregor-Mendel-Straße 4 85354 Freising GERMANY Bavarian Center for Biomolecular Mass Spectrometry Technische Universität München Gregor-Mendel-Straße 4 85354 Freising DEUTSCHLAND / GERMANY (1)
Biotech Research and Innovation Centre (BRIC), University of Copenhagen (UCPH), Copenhagen, Denmark (1)
CAS Key Laboratory for Biomedical Effects of Nanomaterials and Nanosafety, National Center for Nanoscience and Technology, Beijing, China (1)
CRUK -CRUK Scotland Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (1)
Cambridge Institute for Medical Research, University of Cambridge (1)
Cancer Research UK Manchester Institute (1)
Daglig leder, PROMEC Institutt for klinisk og molekylær medisin lars.hagen@ntnu.no 73598508 72573342 Laboratoriesenteret, 231.04.008, Øya, Erling Skjalgssons gate 1 PROMEC, Norway (1)
Department of Laboratory Medicine and Pathology, Center for Individualized Medicine, Mayo Clinic, Rochester, MN, USA (1)
Department of Radiation Oncology, University of Colorado, Anschutz Medical Campus, Aurora, CO, 80045, United States Department of Microbiology and Immunology, University of Colorado, Anschutz Medical Campus, Aurora, CO, 80045, United States (1)
Department of System Biology, School of Life Sciences, Guangdong Provincial Key Laboratory of Cell Microenvironment and Disease Research, Shenzhen Key Laboratory of Cell Microenvironment, Southern University of Science and Technology, Shenzhen, 518055, China. (1)
Division of Pathology/Lab Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX (1)
Division of Radiation and Genome Stability, Department of Radiation Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA 02215, USA Department of Radiation Oncology, Brigham and Women’s Hospital, Boston, MA 02115 (1)
Dr Ainhoa Mielgo, Tumour Microenvironment Lab, Department of Molecular and Clincial Cancer Medicine, University of Liverpool (1)
Human Biology Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA Department of Pharmacology, University of Washington, Seattle, WA, USA (1)
Institute for Cancer Genetics, Department of Genetics and Development, Columbia University Irving Medical Center (1)
Lab Head Systems Oncology group at CRUK Manchester Institute (1)
Lab Neuro-oncology Department of Neurology Erasmus MC (1)
Lab head of the Systems Oncology group at CRUK MI. (1)
Lineberger Comprehensive Cancer Center Department of Pharmacology UNC Chapel Hill Chapel Hill NC USA (1)
Lineberger Comprehensive Cancer Center at UNC Chapel Hill (1)
Nella and Leon Benoziyo Building for Biological Sciences, Weizmann Institute (1)
R&D Center for Clinical Mass Spectrometry, Seegene Medical Foundation, Seongdong-gu, Seoul, Republic of Korea. (1)
Research & Development Center for Clinical Mass Spectrometry, Seegene Medical Foundation, Seongdong-gu, Seoul, Korea (1)
Sun Yat-sen University Cancer Center (SYSUCC) (1)
The Francis Crick Institute (1)
The University of Melbourne (1)

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Mus musculus strain:KPC

Mus musculus strain:KPC Transcriptome or Gene expression

PRJNA229893 | ENA

Salmonella enterica strain:SAGM-KPC

Salmonella enterica strain:SAGM-KPC Genome sequencing and assembly

PRJNA294945 | ENA

Mouse KPC cell secreted extracellular vesicle LC-MSMS

For Mouse KPC cell secreted extracellular vesicle LC-MSMS, extracellular vesicles in Alkbh5-WT or Alkbh5-KO KPC cell culture medium were isolated by ultracentrifugation. The protein and its levels in extracellular vesicle were determined through LC-MSMS.

ORGANISM(S): Mus musculus (Mouse)

2025-03-26 | PXD061967 | Pride

Extracellular vesicle Mouse，kpc cell

Klebsiella pneumoniae strain:Kpn-KPC-1

Klebsiella pneumoniae strain:Kpn-KPC-1 Genome sequencing

KPC-2 isolates

KPC-positive Klebsiella pneumonioae from crete 2010-2014

PRJEB10561 | ENA

antigenic KPC model_bulk pancreas RNASeq

PRJNA544120 | ENA

KPC-producing Enterobacteriaceae

KPC-producing Enterobacteriaceae in Victoria, Australia

PRJNA397262 | ENA

Genes activated by 5-aza-dC (DAC) in pancreatic cancer (KPC-Brca1) epithelial cells

Pancreatic ductal adenocarcinoma (PDAC) is a lethal malignancy that resists current treatments. To test epigenetic therapy against this cancer we used the DNA demethylating drug 5-aza-2’-deoxycytidine (DAC) in a KrasLSL-G12D; p53LSL-R270H/+; Pdx1-cre; Brca1flex2/flex2 (KPC-Brca1) mouse model of agg...

ORGANISM(S): Mus musculus

2013-01-01 | E-GEOD-42365 | biostudies-arrayexpress

Genes activated by 5-aza-dC (DAC) in pancreatic (KPC-Brca1) cancer-associated fibroblasts (CAFs)

ORGANISM(S): Mus musculus

2013-01-01 | E-GEOD-42364 | biostudies-arrayexpress

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