Kraus J J - OmicsDI

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CHEBI ID

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()-(alpha)-Kainic Acid (1)
()-1-Octen-3-ol (1)
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(+)-(S)-6-[4-Chloro-a-(1H-1,2,4-triazol-1-yl)benzyl]-1-methyl-1H-benzotriazole (1)
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(+)-lariciresinol (1)
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(-)-12(R),13(S)-vernolic acid (1)
(-)-8-Prenylnaringenin (1)
(-)-Abietic acid (1)
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(-)-Andrographolide (1)

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Study type

Transcription profiling by array (12)
ChIP-seq (2)
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RNA-seq of coding RNA from single cells (1)

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Lab affiliation

Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium (4)
Department of Cell Biology, Harvard Medical School, Boston MA, USA (3)
Barnett Institute of Chemical and Biological Analysis and Department of Chemistry & Chemical Biology, Northeastern University, Boston, MA, USA. (1)
Bavarian Center for Biomolecular Mass Spectrometry at Klinikum rechts der Isar Technical University of Munich (1)
Biologics R&D Group/ Biomedical Program CSIRO Manufacturing Bayview Ave/ Research Way, Clayton, VIC3168 Australia (1)
Clinical Proteomics, Medizinisches Proteom-Center, Ruhr-Universität Bochum, Universitätsstraße 150, 44801 Bochum, Germany. (1)
Clinical Sciences, Lund University, Sweden (1)
Department of Biochemistry and Microbiology, L-Probe Lab Ghent University (1)
Department of Cell Biology, Blavatnik Institute, Harvard Medical School, 240 Longwood Ave, Boston MA 02115, USA Aligning Science Across Parkinson’s (ASAP) Collaborative Research Network, Chevy Chase, MD 20815, USA (1)
Department of Cell Biology, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA. (1)
Department of Otorhinolaryngology and Head & Neck Surgery, University Medical Center Ulm, Head and Neck Cancer Center of the Comprehensive Cancer Center Ulm, Ulm, Germany (1)
Laboratory of Reproductive Biology, Institute of Biotechnology of the Czech Academy of Sciences, BIOCEV, Vestec, Czech Republic (1)
Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V. (1)
Maynooth University Department of Biology Maynooth University, Maynooth, Co. Kildare, Ireland. (1)
Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology / Hans Knöll Institute Jena (Leibniz-HKI), Jena, Germany (1)
Research Group on Stem Cell Aging Leibniz Institute on Aging – Fritz Lipmann Institute (FLI) Beutenbergstraße 11 07745 Jena, Germany (1)
Rudolf Virchow Center, University of Wuerzburg (1)
Stem Cells, Nestlé Institute of Health Sciences, CH-1015 Lausanne, Switzerland (1)
University Hospital Cologne (1)
University of Copenhagen Faculty of Health and Medical Sciences Novo Nordisk Foundation Center for Protein Research Proteomics Program Copenhagen N Denmark (1)
University of Victoria (1)
University of Wisconsin - Madison (1)

Tags

xref:PubMed:37985428 (1)
xref:PubMed:40193708 (1)
xref:PubMed:33560537 (1)
xref:PubMed:25091629 (1)
xref:PubMed:38489667 (1)

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Two redox-responsive LysR-type transcription factors control the oxidative stress response of Agrobacterium tumefaciens

In the present study we investigate the role of the LysR-type transcriptional regulators LsrB (Atu2186) and OxyR (Atu4641) in the oxidative stress response of Agrobacterium tumefaciens C58 (alias A. fabrum C58). Therein, we used our existing lsrB-deletion (Kraus et al. 2020*) mutant and constructed ...

ORGANISM(S): Agrobacterium fabrum str. C58

2025-03-12 | GSE283062 | GEO

The LysR‐type transcription factor LsrB regulates beta‐lactam resistance in Agrobacterium tumefaciens

We investigated the role of the LysR-type transcriptional regulator LsrB (Atu2186) from Agrobacterium tumefaciens C58 (alias A. fabrum C58), which regulates the expression of small-regulatory-RNA (sRNA) and several protein-coding genes, such as ampD (atu2113). In our current study we invesigated the...

ORGANISM(S): Agrobacterium fabrum Agrobacterium fabrum str. C58

2023-08-12 | GSE240243 | GEO

Enzyme replacement prevents neonatal death, liver damage, and osteoporosis in murine homocystinuria.

Not available

S-EPMC5690381 | biostudies-literature

Skeletal muscle gene expression changes with exercise mode, duration and intensity: STRRIDE study

Skeletal muscle adapts to exercise training of various modes, intensities and durations with a programmed gene expression response. This study dissects the independent and combined effects of exercise mode, intensity and duration to identify which exercise has the most positive effects on skeletal m...

ORGANISM(S): Homo sapiens

2015-05-14 | GSE48278 | GEO

Behavior, body composition, and vascular phenotype of homocystinuric mice on methionine-restricted diet or enzyme replacement therapy.

Not available

S-EPMC6902697 | biostudies-literature

Transcription profiling time series of human skeletal muscle samples from metabolic syndrome patients following defined exercise (STRRIDE study)

STRRIDE is an exercise intervention study of different doses and intensities in overweight women and men with the metabolic syndrome. We profiled biopsies from 3 female and 3 male STRRIDE subjects in the â€œhighâ€ exercise group (2,200 kCal/wk). Muscle biopsies were profiled at entry (0h), and afte...

ORGANISM(S): Homo sapiens

2007-08-02 | E-GEOD-1295 | biostudies-arrayexpress

Skeletal muscle gene expression changes with exercise mode, duration and intensity: STRRIDE study

ORGANISM(S): Homo sapiens

2015-05-14 | E-GEOD-48278 | biostudies-arrayexpress

Safety and efficacy of aerobic training in patients with cancer who have heart failure: an analysis of the HF-ACTION randomized trial.

Not available

S-EPMC4121507 | biostudies-literature

scRNA-seq from Trex1 KO in tumor

Single-cell RNA-seq data for Trex1 WT and KO mice from the tumor. Used for manuscript in submission at Science Advances.

ORGANISM(S): Mus musculus

2026-03-25 | E-MTAB-16526 | biostudies-arrayexpress

Examination of functional interplay between NMNAT-1 (a nuclear NAD+ synthase) and PARP-1 (a nuclear poly(ADP-ribose) polymerase)

NMNAT-1 and PARP-1, two key enzymes in the NAD+ metabolic pathway, localize to the nucleus where integration of their enzymatic activities has the potential to control a variety of nuclear processes. Using a variety of biochemical, molecular, cell-based, and genomic assays, we show that NMNAT-1 and...

ORGANISM(S): Homo sapiens

2012-02-15 | E-GEOD-35358 | biostudies-arrayexpress

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