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TranscriptomicsRNA-seq of Leptospirillum ferriphilum DSM 14647 cells treated with quorum sensing signal compounds
Differential gene expression analysis of Leptospirillum ferriphilum DSM 14647 cells treated with quorum sensing singnal compounds. Briefly, Leptospirillum ferriphilum DSM 14647 cells were grown to early stationary phase in Mackintosh basal salt solution (Mac medium) pH 1.8 (Mackintosh 1978) with 71....
ORGANISM(S): Leptospirillum ferriphilum DSM 14647 
2021-03-01 | E-MTAB-9845 | biostudies-arrayexpress
TranscriptomicsMERVL/Zscan4 network activation results in transient genome-wide DNA demethylation of mESCs
Several previous studies have noted a rare sub-population of murine Embryonic Stem Cells (mESCs) which seem to express genes otherwise specific to the 2-cell stage of embryonic development. Here we sorted single cells from a MERVL/Zscan4 reporter line to investigate the continuum of expression as ce...
ORGANISM(S): Mus musculus 
2016-09-30 | E-MTAB-5058 | biostudies-arrayexpress
TranscriptomicsSingle cell RNA sequencing of naive and primed human pluripotent stem cells treated with SB431542
The aim of this experiment was to investigate the role of TGFβ signalling in human pluripotency, looking at the effect of SB431542 (SB), a potent and selective SMAD inhibitor that blocks TGFβ/Activin receptors ALK5, ALK4, and ALK7, on gene expression. We performed 10X sequencing in naïve and primed ...
ORGANISM(S): Homo sapiens 
2021-08-13 | E-MTAB-10018 | biostudies-arrayexpress
GenomicsSMAD2/3 chromatin immunoprecipitation sequencing (ChIP-seq) in human naïve and primed human pluripotent stem cells
The aim of this experiment was to investigate the role of TGFβ signalling pathway in human pluripotency, through ChIP-seq analysis of its main downstream effector SMAD2/3 in naïve and primed human pluripotent stem cells (hPSCs).
ORGANISM(S): Homo sapiens 
2021-08-13 | E-MTAB-10017 | biostudies-arrayexpress
GenomicsRNA-seq of Leptospirillum ferriphilum DSM 14647 cells treated with quorum sensing signal compounds
RNA-seq of Leptospirillum ferriphilum DSM 14647 cells treated with quorum sensing signal compounds
PRJEB41687 | ENA
UnknownAbdominal infections in the intensive care unit: characteristics, treatment and determinants of outcome.
Not available
S-EPMC4122779 | biostudies-literature
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