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TranscriptomicsRetinoic acid (RA) induction time-course to profile gene expression during mES cell differentiation.
Murine ES cell gene expression before RA induction are used to compare gene expression for time-points of 2, 4, 6hrs post-induction. KH2 ES Cell RA Differentiation Time-course
ORGANISM(S): Mus musculus 
2011-07-18 | E-GEOD-30176 | biostudies-arrayexpress
TranscriptomicsRetinoic acid (RA) induction time-course to profile gene expression during mES cell differentiation
Murine ES cell gene expression before RA induction are used to compare gene expression for time-points of 8, 12, 16, 24, 36, 48, 60 and 72 hours post-induction. KH2 ES Cell RA Differentiation Time-course
ORGANISM(S): Mus musculus 
2012-12-20 | E-GEOD-34279 | biostudies-arrayexpress
TranscriptomicsGlobal analysis of H3K4 methylation
This SuperSeries is composed of the following subset Series: GSE18261: Expression analysis on Mll1+/+ and Mll1-/- MEFs GSE18262: ChIP-chip with antibodies for histone 3 lysine 4 trimethylation and histone 3 in Mll1+/+ and Mll1-/- MEFs GSE18263: ChIP-chip with antibodies for histone 3 lysine 4 trimet...
ORGANISM(S): Mus musculus 
2009-10-20 | E-GEOD-18258 | biostudies-arrayexpress
TranscriptomicsExpression analysis on Mll1+/+ and Mll1-/- MEFs
Global analysis of H3K4 methylation defines MLL family member targets and points to a role for MLL1-mediated H3K4 methylation in the regulation of transcriptional initiation by RNA polymerase II A common landmark of activated genes is the presence of trimethylation on lysine 4 of histone H3 (H3K4) ...
ORGANISM(S): Mus musculus 
2009-10-20 | E-GEOD-18261 | biostudies-arrayexpress
TranscriptomicsChIP-chip with antibodies for histone 3 lysine 4 trimethylation, histone 3, and PolII in Mll1+/+ and Mll1-/- MEFs
Global analysis of H3K4 methylation defines MLL family member targets and points to a role for MLL1-mediated H3K4 methylation in the regulation of transcriptional initiation by RNA polymerase II A common landmark of activated genes is the presence of trimethylation on lysine 4 of histone H3 (H3K4) ...
ORGANISM(S): Mus musculus 
2010-06-21 | E-GEOD-18264 | biostudies-arrayexpress
ProteomicsMudPIT analysis of proteins extracted from mouse KH2ES cell nuclei and enriched by binding to immobilized DNA fragments
Sample Preparation: To identify proteins that are recruited by Hoxb1 to two newly identified DNA motifs, namely Motif_2 and LONG2x, nuclear extracts from 24hrs Retinoic acid- and Doxycycline-induced KH2 cell line with inducible Hoxb1 were added to DNA fragments immobilized on magnetic beads. Five ex...
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2020-12-14 | MSV000086596 | MassIVE
UnknownThe sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution.
Not available
S-EPMC5805609 | biostudies-literature
UnknownAn improved germline genome assembly for the sea lamprey Petromyzon marinus illuminates the evolution of germline-specific chromosomes.
Not available
S-EPMC10166183 | biostudies-literature
TranscriptomicsRetinoids induce rapid dynamic changes in the non-coding RNAs and epigenetic profiles of murine Hox clusters (ChIP-chip)
Physiologically relevant concentrations of retinoic acid are added to Mouse ES cells and a time course (0-72 hours) is examined with tiling array ChIP-chip and RNA-seq to characterize the early dynamics of expression of coding and non-coding RNAs and epigenetics in and around the Hox clusters. Expre...
ORGANISM(S): Mus musculus 
2015-04-27 | E-GEOD-61584 | biostudies-arrayexpress
TranscriptomicsRetinoids induce rapid dynamic changes in the non-coding RNAs and epigenetic profiles of murine Hox clusters (tiling)
Physiologically relevant concentrations of retinoic acid are added to Mouse ES cells and a time course (0-72 hours) is examined with expression tiling arrays to characterize the early dynamics of expression of coding and non-coding RNAs in and around the Hox clusters. Gene expression is examined at ...
ORGANISM(S): Mus musculus 
2015-04-27 | E-GEOD-61585 | biostudies-arrayexpress
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