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MetabolomicsIntegration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance
The development of reliable, mixed-culture biotechnological processes hinges on understanding how microbial ecosystems respond to disturbances. Here we reveal extensive phenotypic plasticity and niche complementarity in oleaginous microbial populations from a biological wastewater treatment plant. W...
2021-04-06 | MTBLS2021 | MetaboLights
ProteomicsIntegrated multi-omics highlights alterations of gut microbiome functions in prodromal and idiopathic Parkinson’s disease
Patients with Parkinson’s disease (PD) exhibit differences in their gut microbial community compared to healthy subjects. Although alterations have been most commonly described as differential abundance of bacteria, fewer studies have focused on the functionnal aspect of these changes. Causal and me...
ORGANISM(S): human gut metagenome 
2025-10-13 | PXD031457 | Pride
Microbiome  human   parkinson  archaea 
UnknownIntegrated multi-omics highlights alterations of gut microbiome functions in prodromal and idiopathic Parkinson's disease.
Not available
S-EPMC12502400 | biostudies-literature
UnknownMechanistic insights into consumption of the food additive xanthan gum by the human gut microbiota.
Not available
S-EPMC11537241 | biostudies-literature
TranscriptomicsExpression and ChIP-seq analyses of embryonic stem cells, extraembryonic endoderm stem cells, and trophoblast stem cells
Bivalent histone domains have been proposed to contribute to pluripotency in embryonic stem cells, suggesting an epigenetic mechanism may regulate stem cell behavior in general. Here we compare histone modifications in two other stem cells derived from the blastocyst. We show that extraembryonic ste...
ORGANISM(S): Mus musculus 
2010-05-16 | E-GEOD-15519 | biostudies-arrayexpress
ProteomicsCritical Assessment of Metaproteome Investigation (CAMPI): a Multi-Lab Comparison of Established Workflows
Metaproteomics, the study of the collective proteome within a microbial ecosystem, has substantially grown over the past few years. This growth comes from the increased awareness that it can powerfully supplement metagenomics and metatranscriptomics analyses. Although metaproteomics is more challeng...
ORGANISM(S): Homo sapiens (Human) Escherichia coli 
2022-02-16 | PXD023217 | Pride
Microbial communities Metaproteomics Multi-omics 
ProteomicsCritical Assessment of Metaproteome Investigation (CAMPI): a Multi-Lab Comparison of Established Workflows
Metaproteomics, the study of the collective proteome within a microbial ecosystem, has substantially grown over the past few years. This growth comes from the increased awareness that it can powerfully supplement metagenomics and metatranscriptomics analyses. Although metaproteomics is more challeng...
ORGANISM(S): Escherichia Coli (ncbitaxon:562) Homo Sapiens (ncbitaxon:9606) 
2022-06-08 | MSV000089620 | MassIVE
UnknownCritical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows.
Not available
S-EPMC8674281 | biostudies-literature
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