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TranscriptomicsSNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
Nucleotide polymorphisms can potentially influence the hybridization of mRNA to 25-mer oligonucleotides. Because Affymetrix Rice Genome Array was designated mainly for Nipponbare genome of Oryza sativa, the expression level of other varieties could not be estimated correctly. We tried to apply new a...
ORGANISM(S): Oryza sativa Japonica Group 
2009-06-09 | E-GEOD-16265 | biostudies-arrayexpress
TranscriptomicsGene regulation by the seed maturation master regulators, LEC1, LEC2, FUS3 and ABI3 [set 1]
During seed maturation, the embryo accumulates nutrition storage compounds such as oil and reserve proteins, and acquires dormancy and desiccation tolerance. Arabidopsis transcription factors LEC1, LEC2, FUS3 and ABI3 are known as the master regulators of seed maturation because all these events dur...
ORGANISM(S): Arabidopsis thaliana 
2014-10-01 | E-GEOD-61684 | biostudies-arrayexpress
TranscriptomicsRice expression atlas (4): Vegetative tissues
Gene expression throughout the reproductive process in rice (Oryza sativa) beginning with primordia development through pollination/fertilization to zygote formation was analyzed. We analyzed 25 stages/organs of rice reproductive development including early microsporogenesis stages with 57,381 probe...
ORGANISM(S): Oryza sativa 
2010-11-11 | E-GEOD-14300 | biostudies-arrayexpress
TranscriptomicsRice expression atlas (3): Early embryogenesis
Gene expression throughout the reproductive process in rice (Oryza sativa) beginning with primordia development through pollination/fertilization to zygote formation was analyzed. We analyzed 25 stages/organs of rice reproductive development including early microsporogenesis stages with 57,381 probe...
ORGANISM(S): Oryza sativa 
2010-11-11 | E-GEOD-14299 | biostudies-arrayexpress
TranscriptomicsRice expression atlas (1): Anther development
Gene expression throughout the reproductive process in rice (Oryza sativa) beginning with primordia development through pollination/fertilization to zygote formation was analyzed. We analyzed 25 stages/organs of rice reproductive development including early microsporogenesis stages with 57,381 probe...
ORGANISM(S): Oryza sativa 
2010-11-11 | E-GEOD-13988 | biostudies-arrayexpress
TranscriptomicsRice expression atlas (2): Pollination - Fertilization
Gene expression throughout the reproductive process in rice (Oryza sativa) beginning with primordia development through pollination/fertilization to zygote formation was analyzed. We analyzed 25 stages/organs of rice reproductive development including early microsporogenesis stages with 57,381 probe...
ORGANISM(S): Oryza sativa 
2010-11-11 | E-GEOD-14298 | biostudies-arrayexpress
TranscriptomicsRice expression atlas (5): Anther development (Agilent data)
Gene expression throughout the reproductive process in rice (Oryza sativa) beginning with primordia development through pollination/fertilization to zygote formation was analyzed. We analyzed 25 stages/organs of rice reproductive development including early microsporogenesis stages with 57,381 probe...
ORGANISM(S): Oryza sativa 
2010-11-11 | E-GEOD-14301 | biostudies-arrayexpress
TranscriptomicsRice expression atlas: Plant reproductive process
Gene expression throughout the reproductive process in rice (Oryza sativa) beginning with primordia development through pollination/fertilization to zygote formation was analyzed. We analyzed 25 stages/organs of rice reproductive development including early microsporogenesis stages with 57,381 probe...
ORGANISM(S): Oryza sativa 
2010-11-11 | E-GEOD-14304 | biostudies-arrayexpress
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