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TranscriptomicsGenome-wide identification of non-coding RNAs targeted by XRN exoribonucleases in collaboration with FRY1 using RNA-Seq in Arabidopsis thaliana.
We report new insight of non-coding RNA degradation mediated by XRN exoribonucleases and FRY1 in Arabidopsis thaliana. We suggest that XRN3, in combination with FRY1, is required to prevent the accumulation of 3’ extensions that arise from thousands of mRNA and miRNA precursor transcripts. Examinati...
ORGANISM(S): Arabidopsis thaliana 
2012-05-02 | E-GEOD-34654 | biostudies-arrayexpress
TranscriptomicsExpression data in Arabidopsis fry1-6, xrn2-4, xrn3-3 and xrn4-6 mutants.
We applied the tiling arrays to study the Arabidopsis whole-genome transcriptome in Arabidopsis fry1-6, xrn2-4, xrn3-3 and xrn4-6 mutants. The total RNA was prepared from 15-day-old Arabidopsis plants grown on the agar plates and used for the microarray hybridization. Three replicative hybridizati...
ORGANISM(S): Arabidopsis thaliana 
2012-05-02 | E-GEOD-32977 | biostudies-arrayexpress
TranscriptomicsOligouridylate binding protein 1b functions in plant heat stress tolerance
To understand affected genes by overexpression of origouridylate binding protein 1b (UBP1b) under heat stress conditions, transcriptional profiling of UBP1box and control plants were analyzed under normal and heat stress (40°C) conditions using Arabidopsis custom microarrays. Microarray analysis wa...
ORGANISM(S): Arabidopsis thaliana 
2016-08-21 | E-GEOD-78713 | biostudies-arrayexpress
TranscriptomicsExpression data in Arabidopsis axe1-5 and met1-3 mutants.
We applied the tiling arrays to study the Arabidopsis whole-genome transcriptome in Arabidopsis axe1-5 and met1-3 mutants. Fifteen-day-old Arabidopsis plants grown on the agar plates were harvested. The total RNA was prepared from 15-day-old Arabidopsis plants (axe1-5 (hda6 mutant), DR5 (parental li...
ORGANISM(S): Arabidopsis thaliana 
2011-05-15 | E-GEOD-23950 | biostudies-arrayexpress
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