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TranscriptomicsTranscript assembly and abundance estimation from RNA-Seq reveals thousands of new transcripts and switching among isoforms
We introduce an approach to transcript discovery coupled with a statistical model for RNA-Seq experiments that produces estimates of transcript abundances. Our algorithms are implemented in an open source software program called Cufflinks. To test Cufflinks, we sequenced and analyzed more than 430 m...
ORGANISM(S): Mus musculus 
2010-04-14 | E-GEOD-20846 | biostudies-arrayexpress
TranscriptomicsRNA-seq from ENCODE/Caltech (Mouse)
RNA-seq is a method for mapping and quantifying the transcriptome of any organism that has a genomic DNA sequence assembly (Mortazavi et al., 2008). RNA-seq is performed by reverse-transcribing an RNA sample into cDNA, followed by high-throughput DNA sequencing, which was done here on the Illumina H...
ORGANISM(S): Mus musculus 
2012-05-09 | E-GEOD-37909 | biostudies-arrayexpress
GenomicsTranscription Factor Binding Sites by ChIP-seq from ENCODE/Caltech
This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Barbara Wold mailto:woldb@caltech.edu, Georgi K. Marinov mailto:georgi@caltech.edu, Diane Trout mailto:diane@caltech.edu). If you have questions about the Genome Browser track associa...
ORGANISM(S): Mus musculus 
2012-04-13 | E-GEOD-36024 | biostudies-arrayexpress
GenomicsHistone Modifications by ChIP-seq from ENCODE/Caltech
This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Barbara Wold mailto:woldb@caltech.edu, Georgi K. Marinov mailto:georgi@caltech.edu, Diane Trout mailto:diane@caltech.edu). If you have questions about the Genome Browser track associa...
ORGANISM(S): Mus musculus 
2012-04-19 | E-GEOD-36023 | biostudies-arrayexpress
TranscriptomicsMyelodysplastic Syndromes (MDS) and Acute Myeloid Leukaemia (AML)
A 10K cDNA microarray was used to compare neutrophil RNA from 21 MDS patient and 2 AML patients to pooled neutrophil RNA from 7 healthy controls.
ORGANISM(S): Homo sapiens 
2005-01-09 | E-GEOD-971 | biostudies-arrayexpress
UnknownGenetic association of primary nonresponse to anti-TNFα therapy in patients with inflammatory bowel disease.
Not available
S-EPMC8578201 | biostudies-literature
UnknownElliptic anisotropy measurement of the f<sub>0</sub>(980) hadron in proton-lead collisions and evidence for its quark-antiquark composition.
Not available
S-EPMC12391314 | biostudies-literature
UnknownCritical Assessment of Metagenome Interpretation: the second round of challenges.
Not available
S-EPMC9007738 | biostudies-literature
Unknown28-country global study on associations between cultural characteristics and Recovery College fidelity.
Not available
S-EPMC11461659 | biostudies-literature
UnknownLarge-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.
Not available
S-EPMC3637176 | biostudies-literature
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