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TranscriptomicsChIP-chip of E. coli K-12 MG1655 with antibody against ArcA-8myc or Fnr-8myc under various conditions.
Determining how facultative anaerobic organisms sense and direct cellular responses to electron acceptor availability has been a subject of intense study. However, even in the model organism Escherichia coli, established mechanisms only explain a small fraction of the hundreds of genes that are regu...
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2014-02-27 | E-GEOD-55366 | biostudies-arrayexpress
TranscriptomicsFermentative and nitrate respiratory transcriptome analysis of E. coli K12 MG1655
Determining how facultative anaerobic organisms sense and direct cellular responses to electron acceptor availability has been a subject of intense study. However, even in the model organism Escherichia coli, established mechanisms only explain a small fraction of the hundreds of genes that are regu...
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2014-02-27 | E-GEOD-55365 | biostudies-arrayexpress
TranscriptomicsAggression, cognitive and neurodevelopmental abnormalities associated with disruption of the intellectual disability and histone demethylase gene Kdm5c
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Mus musculus 
2016-01-27 | E-GEOD-61036 | biostudies-arrayexpress
GenomicsChIP-Seq of H3K4 methylation in neurons isolated from E16.5 mouse embryonic cortices from WT and SMCX KO mice
We conducted ChIP-Seq of H3K4 methylation in neurons isolated from E16.5 mouse embryonic cortices from WT and SMCX KO mice and harvested after 10 days in vitro culture. We sequenced H3K4me1, H3K4me3 ChIP and Input samples from mouse embryonic cortical neurons cultured in vitro for 10 days. Experimen...
ORGANISM(S): Mus musculus 
2016-01-27 | E-GEOD-61023 | biostudies-arrayexpress
MetabolomicsGlobal Metabonomic and Proteomic Analysis of Human Conjunctival Epithelial Cells (IOBA-NHC) in Response to Hyperosmotic Stress
“Dry eye” is a multi-factorial inflammatory disease affecting the ocular surface. Tear hyperosmolarity in dry eye contributes to inflammation and cell damage. Recent research efforts on dry eye have been directed towards biomarker discovery for diagnosis, response to treatment and disease mechanisms...
2015-08-31 | MTBLS214 | MetaboLights
TranscriptomicsExpression data comparing Huh7 CD133+ and CD133- HCC cells
To identify candidate genes involved in enhanced tumorigenicity of CD133+ liver tumor-initiating cells Affymetrix Human Genome U133 Plus GeneChip 2.0 HCC cell line Huh7 was sorted into CD133+ and CD133- populations by flow cytometry
ORGANISM(S): Homo sapiens 
2012-04-04 | E-GEOD-23450 | biostudies-arrayexpress
TranscriptomicsExpression data comparing PLC8024 CD133+ and CD133- HCC cells
To identify candidate genes involved in enhanced tumorigenicity of CD133+ liver tumor-initiating cells Affymetrix Human Genome U133 Plus GeneChip 2.0 HCC cell line PLC8024 was sorted into CD133+ and CD133- populations by flow cytometry
ORGANISM(S): Homo sapiens 
2012-04-04 | E-GEOD-23451 | biostudies-arrayexpress
TranscriptomicsRNA-Seq in neurons from E16.5 mouse embryonic cortices from WT and SMCX KO mice
We conducted RNA-Seq (using Direct Ligation of Adapters to first strand cDNA) in neurons from E16.5 mouse embryonic cortices from WT and SMCX KO mice and harvested after 10 days in vitro culture. We sequenced RNA samples after 10 days in vitro cultures in biological and technical duplicates. 4 RNA s...
ORGANISM(S): Mus musculus 
2016-01-27 | E-GEOD-61024 | biostudies-arrayexpress
TranscriptomicsThe relationship between DNA methylation, genetic and expression inter-individual variation in untransformed human fibroblasts [expression profiling]
Background: DNA methylation has long been known to play an essential role in the epigenetic regulation of gene expression and other cellular functions, and has been in some cases linked to genetic variation. While its presence near the transcription start site of a gene has been associated with red...
ORGANISM(S): Homo sapiens 
2013-12-13 | E-GEOD-53243 | biostudies-arrayexpress
UnknownAccurately assessing the risk of schizophrenia conferred by rare copy-number variation affecting genes with brain function.
Not available
S-EPMC2936523 | biostudies-literature
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