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ProteomicsCilia proteome isolated from the multi-ciliated cells of Xenopus laevis embryo epidermis
We characterized the cilia proteome isolated from the multi-ciliated cells of Xenopus laevis embryo epidermis.
ORGANISM(S): Xenopus laevis (African clawed frog) 
2019-11-15 | PXD010722 | Pride
Multiciliated cells Xenopus laevis Cilia proteome 
TranscriptomicsDevelopmental gene expression of Xenopus laevis J strain
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Xenopus laevis 
2016-10-24 | E-GEOD-73431 | biostudies-arrayexpress
ProteomicsProteomics of Pseudomonas aeruginosa PAO1 and PA14
Recent studies have shown that the concentrations of proteins expressed from orthologous genes are often conserved across organisms, and to a greater extent than the abundances of the corresponding mRNAs. However, such studies have not distinguished between evolutionary (e.g., sequence divergence) a...
ORGANISM(S): Pseudomonas aeruginosa PA14 Pseudomonas aeruginosa PAO1 
2014-05-08 | PXD000684 | Pride
Synthetic cystic fibrosis medium Pseudomonas aeruginosa Msblender 
TranscriptomicsCardiac transcriptome of Tcf21-depleted Xenopus embryos
The aim of the approach was to use RNAseq analysis to identify genes expressed in Xenopus epicardium that were affected by embryonic depletion of the epicardial transcription factor Tcf21 compared to control-MO injected siblings. Both upregulated and downregulated genes were validated by RT-PCR and...
ORGANISM(S): Xenopus laevis 
2013-07-05 | E-GEOD-45786 | biostudies-arrayexpress
TranscriptomicsDevelopmental gene expression of Hymenochirus boettgeri
RNA-seq experiments to construct Hymenochirus bettgeri transcripts Collect mRNA from whole eggs/embryos/tadpoles, with poly-A enrichment method
ORGANISM(S): Hymenochirus boettgeri 
2016-10-24 | E-GEOD-76089 | biostudies-arrayexpress
TranscriptomicsDevelopmental gene expression of Xenopus laevis J strain [stage]
Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genome project. This work is funded by Agency Japanese Ministry of Education, Culture, Sports, Science and Technology (MEXT; "Genome Science" Gra...
ORGANISM(S): Xenopus laevis 
2016-10-24 | E-GEOD-73430 | biostudies-arrayexpress
ProteomicsProteomics of Pseudomonas aeruginosa PAO1 and PA14
Recent studies have shown that the concentrations of proteins expressed from orthologous genes are often conserved across organisms, and to a greater extent than the abundances of the corresponding mRNAs. However, such studies have not distinguished between evolutionary (e.g., sequence divergence) a...
ORGANISM(S): Pseudomonas Aeruginosa Pa14 (ncbitaxon:652611) Pseudomonas Aeruginosa Pao1 (ncbitaxon:208964) 
2018-08-29 | MSV000082863 | MassIVE
TranscriptomicsTissue gene expression of Xenopus laevis J strain [tissue]
Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. This work is funded by Agency Japanese Ministry of Education, Culture, Sports, Science and Technology (MEXT; "Genome Science" Grant ID 221S000...
ORGANISM(S): Xenopus laevis 
2016-10-24 | E-GEOD-73419 | biostudies-arrayexpress
GenomicsCoordinated genomic control of ciliogenesis and cell movement by Rfx2
We have performed a systems-level analysis of the RFX/Daf-19 family transcription factor, Rfx2. Using a combination of high-throughput sequencing of Rfx2-regulated transcripts and chromosomal binding sites, we provide a comprehensive accounting of the target genes by which Rfx2 controls ciliogenesis...
ORGANISM(S): Xenopus laevis 
2013-12-12 | E-GEOD-50593 | biostudies-arrayexpress
ProteomicsO.satival - Leaf, SC (Mcwhiteetal.,cell2020)
abundance based on Spectral counting, Interaction consistency score: 4.8, Coverage: 24
ORGANISM(S): 39947 
2020-00-00 | 54616841 | PAXDB
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