Lactic acid bacteria

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Unknown (3267)
Genomics (1220)
Transcriptomics (91)
Proteomics (62)
Metabolomics (37)
Models (18)
Other (3)

Organisms

Lactococcus lactis (13)
Homo sapiens (12)
Saccharomyces cerevisiae (9)
Staphylococcus aureus (7)
Pediococcus acidilactici (6)
Lactobacillus johnsonii (6)
Lactobacillus helveticus (6)
Streptococcus thermophilus (6)
Lactococcus cremoris subsp. cremoris MG1363 (5)
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 (3)
Lactococcus cremoris subsp. cremoris NZ9000 (2)
human nasopharyngeal metagenome (2)
Saccharomyces cerevisiae Vin13 (2)
Caenorhabditis elegans (2)
Escherichia coli (2)
Lacticaseibacillus paracasei ATCC 334 (1)
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 (1)
Lactiplantibacillus plantarum JDM1 (1)
Ligilactobacillus salivarius DSM 20555 = ATCC 11741 (1)
Lactobacillus phage ATCC8014 (1)
Limosilactobacillus fermentum ATCC 14931 (1)
Lacticaseibacillus casei BL23 (1)
Saccharomycetaceae (1)
Serendipita vermifera (1)
Leuconostoc gasicomitatum LMG 18811 (1)
Lactococcus lactis subsp. lactis (1)
Streptococcus mutans UA159 (1)
Faecalibacterium prausnitzii (1)
soil metagenome (1)
Aspergillus fumigatus (1)

Organisms

Lactiplantibacillus plantarum (72)
Lacticaseibacillus paracasei (26)
Lacticaseibacillus rhamnosus (19)
Pediococcus pentosaceus (16)
food fermentation metagenome (16)
Pediococcus acidilactici (15)
food metagenome (15)
Lactococcus lactis (13)
Enterococcus faecium (12)
Mus musculus (12)
Levilactobacillus brevis (11)
Streptococcus thermophilus (8)
Bacteria (8)
Limosilactobacillus fermentum (8)
Homo sapiens (8)
Weissella cibaria (7)
Lactiplantibacillus pentosus (7)
Leuconostoc mesenteroides (6)
Limosilactobacillus reuteri (6)
Leuconostoc citreum (6)
human gut metagenome (6)
Lacticaseibacillus casei (5)
Lactobacillales (5)
Lactococcus lactis subsp. lactis (5)
Enterococcus lactis (5)
Lactobacillus (5)
fermentation metagenome (5)
Lactococcus cremoris (5)
unidentified (5)
Lactococcus cremoris subsp. cremoris MG1363 (4)

Repository

ENA (1219)
geo (54)
pride (51)
biostudies-arrayexpress (41)
MetaboLights (35)
BioModels (16)
iProX (8)
FAIRDOMHub (2)
MassIVE (2)
MetabolomicsWorkbench (2)
PAXDB (1)

Tissue

Cell culture (8)
Bacterial cells (2)
Cell line cell (2)
Cell suspension culture (2)
Dendritic cell (2)
Whole body (2)
Bacterial protein (1)
Bone marrow (1)
Brain (1)
Cell (1)
Cerebrospinal fluid (1)
Colon (1)
Cotyledon (1)
Egg (1)
Embryo (1)
Endosperm (1)
Epithelial cell (1)
Erythrocyte (1)
Feces (1)
Flower (1)
Flower bud (1)
HeLa cell (1)
Heart (1)
Intestinal mucosa (1)
JURKAT cell (1)
Kidney (1)
Leaf (1)
Liver (1)
Milk (1)
Monocyte (1)

Disease

Disease free (1)
Hemolytic-uremic syndrome (1)

Technology Type

Mass Spectrometry (53)
Shotgun proteomics (36)
Mass spectrometry (19)
Mass spectrometry assay (12)
Bottom-up proteomics (10)
NMR spectroscopy (4)
Data-dependent acquisition (4)
SWATH MS (3)
ESI (2)
Gel-based experiment (2)
Data-independent acquisition (1)
Mass spectrometry imaging (1)
Metaproteomics (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse-phase (7)
Gas Chromatography MS - positive (5)
Liquid Chromatography MS - positive - reverse-phase (5)
Liquid Chromatography MS - positive - hilic (5)
Liquid Chromatography MS - negative - hilic (4)
Liquid Chromatography MS - positive - reverse phase (4)
Liquid Chromatography MS - negative - reverse phase (4)
Liquid Chromatography MS - (3)
Nuclear Magnetic Resonance (NMR) - (3)
Liquid Chromatography MS - negative - HILIC (2)
Liquid Chromatography MS - positive - HILIC (2)
AB SOLiD 4 System (1)
G2505A DNA microarray scanner [Agilent] (1)
Illumina HiSeq 1500 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
AB 5500xl Genetic Analyzer (1)
Agilent 6520 time-of-flight mass spectrometer (1)
LTQ Orbitrap Velos (1)
Q Exactive (1)
Liquid Chromatography MS - alternating - direct infusion (1)
Gas Chromatography MS - positive - low-polarity (1)
Direct infusion MS - negative (1)
Liquid Chromatography MS - NEG - HILIC (1)
Liquid Chromatography MS - POS - HILIC (1)
Liquid Chromatography MS - - - Q Exactive (1)
Nuclear Magnetic Resonance (NMR) (1)
Direct infusion MS - positive (1)
5975C Series GC/MSD (Agilent) (1)

Publication Date

2025 (26)
2026 (24)
2024 (21)
2023 (19)
2010 (19)
2022 (16)
2021 (11)
2020 (11)
2011 (11)
2013 (9)
2015 (6)
2012 (6)
2009 (6)
2019 (5)
2018 (5)
2005 (3)
2017 (3)
2016 (3)
2008 (2)
2007 (2)
2006 (1)
2014 (1)

UNIPROT ID/AC

272623.L140905 (1)
272623.L199247 (1)
272623.L27434 (1)
272623.L36774 (1)
272623.L38510 (1)
272623.L51368 (1)
272623.L54760 (1)
6PGD_LACLA (1)
ACCD_LACLA (1)
ACKA1_LACLA (1)
ACKA2_LACLA (1)
ACMA_LACLA (1)
ACP_LACLA (1)
ACYP_LACLA (1)
ADDB_LACLA (1)
ADD_LACLA (1)
ALDC_LACLA (1)
ALDR_LACLA (1)
ALR_LACLA (1)
AMPN_LACLA (1)
APT_LACLA (1)
ARCA_LACLA (1)
ARGD_LACLA (1)
ARGR_LACLA (1)
AROA_LACLA (1)
AROB_LACLA (1)
AROC_LACLA (1)
AROD_LACLA (1)
AROE_LACLA (1)
AROK_LACLA (1)

CHEBI ID

CHEBI:15428 (8)
CHEBI:15741 (7)
CHEBI:30769 (7)
CHEBI:6650 (6)
CHEBI:17822 (5)
CHEBI:17234 (5)
CHEBI:16708 (5)
CHEBI:25017 (5)
CHEBI:28044 (5)
CHEBI:7916 (5)
CHEBI:18012 (5)
CHEBI:32816 (5)
CHEBI:16236 (3)
CHEBI:15379 (1)
CHEBI:16812 (1)
CHEBI:16982 (1)
CHEBI:15688 (1)
CHEBI:16444 (1)
CHEBI:30089 (1)
CHEBI:15350 (1)
CHEBI:15351 (1)
CHEBI:15346 (1)
CHEBI:24996 (1)
CHEBI:18367 (1)
CHEBI:15343 (1)
CHEBI:15361 (1)
CHEBI:15422 (1)
CHEBI:16761 (1)
CHEBI:16908 (1)
CHEBI:15846 (1)

Metabolite Name

Uridine (11)
Uracil (9)
Tetradecanedioic acid (9)
Citric acid (8)
Adenine (8)
Cytosine (7)
L-Tryptophan (7)
L-Tyrosine (7)
Hypoxanthine (7)
Kynurenic acid (6)
L-Threonine (6)
Serotonin (6)
Pantothenic acid (6)
L-Histidine (6)
Taurine (6)
Deoxycholic acid (6)
Dethiobiotin (6)
Adenosine (6)
Riboflavin (6)
Hexadecanedioic acid (6)
Uric acid (6)
Xanthine (6)
Guanosine (6)
Pseudouridine (6)
Sucrose (6)
L-Valine (6)
(S)-9-Hydroxy-10-undecenoic acid (5)
D-Glucose (5)
N-Acetylgalactosamine (5)
Glycine (5)

First Public Date

2024 (197)
2025 (166)
2026 (156)
2023 (133)
2022 (127)
2013 (83)
2021 (65)
2020 (57)
2018 (52)
2014 (51)
2019 (48)
2017 (39)
2015 (28)
2016 (16)
2012 (1)

Modelling Approach

Constraint-based model (13)
Agent-based model (1)
Ordinary differential equation model (1)

Lab affiliation

Wageningen University (4)
Department of Modeling of Biological Processes COS, Heidelberg University (2)
ICM, Molecular Evolution, Uppsala University (2)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (1)
Animal Sciences Department, Ohio Sate University (1)
Associate Professor, Institute of Advanced Study in Science and Technology (IASST), Guwahati-110035, Assam, India (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University Munich (TUM) Gregor-Mendel-Straße 4 85354 Freising (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technische Universität München (TUM) Gregor-Mendel-Straße 4 85354 Freising DEUTSCHLAND / GERMANY Tel. / Phone: +49 8161 71-6130 E-Mail: tina.ludwig@tum.de www.baybioms.tum.de (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technische Universität München (TUM) Gregor-Mendel-Straße 4 85354 Freising GERMANY (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technische Universität München Gregor-Mendel-Straße 4 85354 Freising GERMANY (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), Technical University Munich, Freising, Germany (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), Technical University of Munich (TUM), Freising, Germany (1)
Bavarian Center for Biomolecular Mass Spectrometry, Technical University of Munich, Freising, Germany (1)
Beijing Advance Innovation Center for Food Nutrition and Human Health, Beijing Laboratory of Food Quality and Safety, Beijing Engineering and Technology Research Center of Food Additives, Beijing Technology and Business University (BTBU), Beijing 100048, China (1)
Biological Mass Spectrometry Lab, Department of Translational Medicine (DiMeT), Center for Translational Research on Autoimmune & Allergic Diseases - CAAD, University of Piemonte Orientale, Corso Trieste 15/A, 28100, Novara, Italy (1)
Biological Mass Spectrometry Lab,Department of Translational Medicine (DiMeT),Center for Translational Research on Autoimmune & Allergic Diseases - CAAD, University of Piemonte Orientale, Novara (NO),Italy. (1)
Biological Mass Spectrometry Lab,Department of Translational Medicine (DiMeT),Center for Translational Research on Autoimmune & Allergic Diseases - CAAD,University of Piemonte Orientale, Corso Trieste 15/A, 28100, Novara, Italy (1)
CERELA CONICET - Argentina (Reference Center for Lactobacilli, National Scientific and Technical Research Council - Argentina) (1)
Center for Biological Research (CIB-CSIC) (1)
Centro de Referencia para Lactobacilos (CERELA)-CCT NOA Sur- CONICET (1)
Core Facility for Mass spectrometry & Proteomics, Max Planck Institut Marburg, Germany (1)
Department of Biochemistry & Pharmacology, Bio21 Molecular Science and Biotechnology Institute The University of Melbourne, Victoria, 3010 Australia (1)
Department of Biochemistry, Soonchunhyang University, College of Medicine, Cheonan, 31151, Republic of Korea (1)
Department of Biology, Maynooth University, Maynooth, Co. Kildare, Ireland; (1)
Department of Chemistry and Chemistry Institute for Functional Materials, Pusan National University, Busan 46241, South Korea (1)
Department of Comparative Biochemistry and Bioanalytics, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Poland (1)
Department of Comparative Biochemistry and Bioanalytics, Faculty of Biochemistry, Biophysicsand Biotechnology, Jagiellonian University (1)
Department of Microbiology The Ohio State University Columbus OH 43210 (1)
Department of Microbiology, The Ohio State University, Columbus OH (1)
Department of Modeling of Biological Processes COS, Heidelberg University, Germany (1)

IsPrivate

False (16)

Model Flag

Non Kinetic (3)

Submitter Keywords

FROG (11)
Manuscript Accepted (1)

Classification

bacteria (63)
viruses (1)

Modification

2x(15)N labeled L-lysine (1)

Study type

Transcription profiling by array (27)
RNA-seq of coding RNA (6)
Unknown experiment type (3)
Comparative genomic hybridization by array (3)
Other (1)
RNA-seq of total RNA (1)

Release Date

2022 (442)
2023 (415)
2025 (356)
2021 (320)
2020 (317)
2024 (315)
2019 (198)
2018 (183)
2017 (118)
2016 (111)
2015 (88)
2012 (57)
2014 (53)
2026 (47)
2013 (46)
2011 (42)
2010 (35)
2003 (23)
2007 (22)
2009 (21)
2002 (21)
2006 (17)
2008 (14)
2005 (12)
2004 (10)
2000 (10)
2001 (6)
1999 (6)
1998 (3)

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Mechanistic Insights into Lactic Acid Bacteria-Driven Biotransformation of Undaria pinnatifida: Ecological Dominance, Metabolic Reprogramming, and Quality Formation

Undaria pinnatifida, a representative brown macroalga, is limited in high-value food applications due to its dense cell wall structure, pronounced marine odor, and inefficient conventional processing. In this study, a controlled fermentation strategy was established using different lactic acid bacte...

2026-05-20 | MTBLS14540 | MetaboLights

Limosilactobacillus reuteri with indole-3-lactic acid-producing capacity protects against atherosclerosis by fortifying the gut-vascular barrier

Introduction: The gut microbiota and its metabolites are implicated in atherosclerosis, but the specific effector molecules and their pathophysiological significance remain unclear.

Objectives: This study aimed to identify key atheroprotective microbial metabolites and to elucidate the mech...

2026-01-31 | MTBLS13620 | MetaboLights

Bacteroides uniformis degrades β-glucan to promote Lactobacillus johnsonii improving indole-3-lactic acid levels in alleviating colitis

The gut microbiota plays a crucial role in the onset and progression of inflammatory bowel disease (IBD). β-glucan (BG), a soluble dietary fiber widely present in oats, barley, fungi, yeast and some bacteria, has multiple bioactive properties such as mitigating intestinal inflammation; however, t...

2024-02-12 | MTBLS8950 | MetaboLights

Lactic acid bacteria

Whole genome sequencing of lactic acid bacteria

PRJNA1079298 | ENA

Responses of Staphylococcus aureus exposed to HCl and organic acid stress.

Staphylococcus aureus is an important food poisoning bacterium. In food preservation, acidification is a well-known method. Permeant weak organic acids, like lactic and acetic acids, are known to be more effective against bacteria than inorganic strong acids (e.g., HCl). Growth experiments and metab...

ORGANISM(S): Staphylococcus aureus

2011-04-15 | E-BUGS-87 | biostudies-arrayexpress

Foodborne Lactic Acid Bacteria Inactivate Planktonic and Ses-sile Escherichia coli O157:H7 in a meat processing environment: A Physiological and Proteomic Study

Enterohemorrhagic Escherichia coli (EHEC) is a major foodborne pathogen capable of forming persistent biofilms on surfaces in meat processing environments, posing a risk of cross-contamination. This study aimed to evaluate the inhibitory potential of food-derived lactic acid bacteria (LAB) against E...

ORGANISM(S): Escherichia coli lactic acid bacterium ZJGS0101

2025-11-17 | PXD067300 | Pride

Lactic acid bacteria

Isolation and characterization of novel lactic acid bacteria from raw sewage

PRJNA435410 | ENA

Vaginal lactic acid bacteria

Vaginal Lactic Acid Bacteria Genome sequencing and assembly

PRJNA604908 | ENA

Lactic acid bacteria

Genome sequencing and comparative analysis of probiotic lactic acid bacteria strains

PRJNA1440149 | ENA

Brassica pekinensis with heterofermentative lactic acid bacteria

Brassica pekinensis with heterofermentative lactic acid bacteria Raw sequence reads

PRJNA939542 | ENA

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