Lan Liang L - OmicsDI

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Unknown (310)
Transcriptomics (129)
Genomics (13)
Proteomics (8)
Metabolomics (2)

Organisms

Homo sapiens (69)
Mus musculus (23)
Mytilus galloprovincialis (7)
Saccharomyces cerevisiae (5)
Arabidopsis thaliana (5)
Caldicellulosiruptor saccharolyticus (3)
Candida albicans (3)
Rattus norvegicus (3)
Agrobacterium tumefaciens (2)
Streptococcus mutans (2)
Pseudomonas putida (2)
Drosophila melanogaster (2)
Streptococcus pneumoniae D39 (2)
Ocimum americanum (1)
Caldicellulosiruptor kronotskyensis (1)
Olea europaea (1)
Brevibacterium aurantiacum (1)
Macroptilium atropurpureum (1)
Bifidobacterium breve UCC2003 (1)
Streptococcus gordonii (1)
Populus trichocarpa x Populus deltoides (1)
Dirofilaria immitis (1)
Macaca mulatta (1)
Xenopus laevis (1)
Aedes aegypti (1)
Streptococcus pneumoniae (1)
Triticum aestivum (1)
Escherichia coli (1)
Sus scrofa (1)
Clostridium acetobutylicum ATCC 824 (1)

Repository

biostudies-arrayexpress (141)
iProX (4)
pride (4)
MetaboLights (2)
EGA (1)

Tissue

Cell culture (2)
Colon (2)
Blood cell (1)
Blood plasma (1)

Disease

Colon cancer (2)
Neuroblastoma (1)
Severe acute respiratory syndrome (1)

Technology Type

Mass Spectrometry (4)
Mass spectrometry (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Shotgun proteomics (2)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
GenePix 4000B Microarray Scanner (1)
Illumina Genome Analyzer II (1)
Scanning hardware (1)
NextSeq 550 (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)

Publication Date

2011 (21)
2013 (20)
2008 (19)
2012 (17)
2015 (16)
2014 (15)
2010 (13)
2016 (7)
2022 (6)
2024 (5)
2007 (3)
2021 (3)
2009 (2)
2006 (2)
2019 (1)
2020 (1)

CHEBI ID

CHEBI:1015 (2)
CHEBI:102484 (2)
CHEBI:15318 (2)
CHEBI:15400 (2)
CHEBI:15714 (2)
CHEBI:15729 (2)
CHEBI:15843 (2)
CHEBI:15882 (2)
CHEBI:15956 (2)
CHEBI:15971 (2)
CHEBI:15999 (2)
CHEBI:16015 (2)
CHEBI:16020 (2)
CHEBI:16026 (2)
CHEBI:16027 (2)
CHEBI:16031 (2)
CHEBI:16040 (2)
CHEBI:16095 (2)
CHEBI:16112 (2)
CHEBI:16175 (2)
CHEBI:16196 (2)
CHEBI:16217 (2)
CHEBI:16235 (2)
CHEBI:16243 (2)
CHEBI:16283 (2)
CHEBI:16335 (2)
CHEBI:16344 (2)
CHEBI:16347 (2)
CHEBI:16353 (2)
CHEBI:16359 (2)

Metabolite Name

Adenosine (2)
Azelaic acid (2)
Corticosterone (2)
Deoxycorticosterone acetate (2)
Guanine (2)
Inosine (2)
Isoxanthopterin (2)
Melatonin (2)
Methyl palmitate (2)
Minocycline (2)
Prostaglandin B1 (2)
Retinoate (2)
Sebacic acid (2)
(+ (1)
(+)-Pinoresinol (1)
(+)-Prosopinine (1)
(+/-)-c75 (1)
(+/-)12(13)-DiHOME (1)
(-)-Acanthocarpan (1)
(-)-Glyceollin I (1)
(-)-Menthyl O-beta-D-glucoside (1)
(-)-camphor (1)
(-)-caryophyllene oxide (1)
(1-Ribosylimidazole)-4-acetate (1)
(10S)-Juvenile hormone III acid diol (1)
(10S)-Juvenile hormone III diol (1)
(15S)-15-Hydroxy-5,8,11-cis-13-trans-eicosatetraenoate (1)
(2'S)-Deoxymyxol 2'-(2,4-di-O-methyl-alpha-L-fucoside) (1)
(2'S)-Deoxymyxol 2'-alpha-L-fucoside (1)
(2S,3S)-2-Hydroxytridecane-1,2,3-tricarboxylate (1)

Study type

Transcription profiling by array (107)
RNA-seq of coding RNA (15)
ChIP-seq (10)
RNA-seq of non coding RNA (3)
Unknown experiment type (2)
Methylation profiling by high throughput sequencing (2)
Transcription profiling by SAGE (1)
MicroRNA profiling by array (1)

Release Date

2025 (50)
2022 (49)
2024 (42)
2023 (30)
2021 (27)
2015 (25)
2014 (24)
2013 (24)
2016 (22)
2011 (22)
2008 (20)
2012 (19)
2020 (19)
2018 (17)
2019 (16)
2017 (16)
2010 (13)
2026 (8)
2009 (3)
2007 (3)
2006 (2)

Lab affiliation

The Sixth Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China (2)
Doctor at Tongji Hospital, Huazhong University of Science and Technology, Wuhan, China (1)
Shanghai Institute of Materia Medica, Chinese Academy of Sciences (1)

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Transcriptomics and metabolomics of engineered Synechococcus elongatus during photomixotrophic growth

BACKGROUND: Converting carbon dioxide (CO2) into value-added chemicals using engineered cyanobacteria is a promising strategy to tackle the global warming and energy shortage issues. However, most cyanobacteria are autotrophic and use CO2 as a sole carbon source, which makes it h...

2022-03-21 | MTBLS2825 | MetaboLights

Identification of interacting proteins with circPLCE1-411 in hunan colorectal cancer cell by LC-MS

To identify the unknown interacting proteins with circPLCE1-411, we extracted the proteins from HCT8 cells and performed co-immunoprecipitation assays with Flag antibody. Then the proteins were subjected to mass spectrometry

ORGANISM(S): Homo sapiens (Human)

2021-09-10 | PXD023617 | Pride

Receptor identification of Cyr61 on hunan colorectal cancer cell by LC-MS

To identify the unknown receptor, we extracted the membranous proteins from HCT8 cells treated with rCyr61.Then the proteins were subjected to mass spectrometry

ORGANISM(S): Homo sapiens (Human)

2022-02-15 | PXD019954 | Pride

Receptor Cyr61 Lc-ms Hunan colorectal cancer cell

Creatine and L-carnitine attenuate muscular laminopathy in the LMNA mutation transgenic zebrafish.

Not available

S-EPMC11150447 | biostudies-literature

Discovering novel bile protection systems in Bifidobacterium breve UCC2003 through functional genomics

Tolerance of gut commensals to bile salt exposure is an important feature for their survival in and colonization of the intestinal environment. A transcriptomic approach was employed to study the response of Bifidobacterium breve UCC2003 to bile, allowing the identification of a number of bile-induc...

ORGANISM(S): Bifidobacterium breve UCC2003

2011-12-16 | E-GEOD-31032 | biostudies-arrayexpress

Neuroblastoma cell lines treated with DAC (2'-deoxy-5-azacytidine), a DNA-methylation inhibitor

8 neuroblastoma (NB) cell lines (CLB-GA, IMR-32, SH-SY5Y, N206, CHP-902R, LAN-2, SK-N-AS, SJNB-1) were profiled on the Affymetrix HGU-133plus2,0 platform before and after treatment with DAC (2'-deoxy-5-azacytidine) to investigate the influence on expression after inhibiting DNA-methylation 8 NB cell...

ORGANISM(S): Homo sapiens

2012-09-13 | E-GEOD-31229 | biostudies-arrayexpress

Methylation map of 8 neuroblastoma cell lines: NGS after MBD2-capture

8 neuroblastoma (NB) cell lines (CLB-GA, IMR-32, SH-SY5Y, N206, CHP-902R, LAN-2, SK-N-AS, SJNB-1) their methylome is determined by sequencing after MBD2-capture using MethylCollector (ActiveMotif) 8 NB cell lines were included (CLB-GA, IMR-32, SH-SY5Y, N206, CHP-902R, LAN-2, SK-N-AS, SJNB-1) in this...

ORGANISM(S): Homo sapiens

2012-09-13 | E-GEOD-31353 | biostudies-arrayexpress

Inducible expression of PrPC in mouse skeletal muscles results in myopathy characterized by changes in gene expression

Over-expression of wild type PrP in skeletal muscles is sufficient to cause a primary myopathy with no signs of peripheral neuropathy, possibly due to accumulation of a cytotoxic truncated form of PrP and/or PrP aggregation. In this study we used DNA microarrays to identify 1499 transcripts that ar...

ORGANISM(S): Mus musculus

2008-08-27 | E-GEOD-12576 | biostudies-arrayexpress

LLDT-8 attenuates brain metastasis in non-small cell lung cancer <i>via</i> selective p53 activation.

Not available

S-EPMC12706912 | biostudies-literature

Structure of the Lassa virus nucleoprotein revealed by X-ray crystallography, small-angle X-ray scattering, and electron microscopy.

Not available

S-EPMC3207459 | biostudies-literature

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