Landis C C - OmicsDI

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Unknown (217)
Transcriptomics (8)
Genomics (2)
Metabolomics (2)

Organisms

Homo sapiens (4)
Mus musculus (3)
Drosophila melanogaster (1)
Caenorhabditis elegans (1)

Organisms

Caenorhabditis elegans (1)

Repository

biostudies-arrayexpress (8)
MetaboLights (2)
geo (1)
ENA (1)

Disease

Normal (1)

Technology Type

Mass spectrometry (2)

Instrument Platform

Illumina HiSeq 2500 (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2013 (2)
2008 (2)
2007 (2)
2023 (2)
2016 (1)
2009 (1)
2020 (1)

CHEBI ID

CHEBI:116314 (2)
CHEBI:10033 (1)
CHEBI:10334 (1)
CHEBI:104022 (1)
CHEBI:10587 (1)
CHEBI:107636 (1)
CHEBI:110187 (1)
CHEBI:112 (1)
CHEBI:1148 (1)
CHEBI:1230 (1)
CHEBI:131381 (1)
CHEBI:131421 (1)
CHEBI:131454 (1)
CHEBI:131659 (1)
CHEBI:131668 (1)
CHEBI:131738 (1)
CHEBI:131888 (1)
CHEBI:131989 (1)
CHEBI:132274 (1)
CHEBI:132996 (1)
CHEBI:133077 (1)
CHEBI:133094 (1)
CHEBI:133096 (1)
CHEBI:133140 (1)
CHEBI:133144 (1)
CHEBI:133657 (1)
CHEBI:134013 (1)
CHEBI:134014 (1)
CHEBI:134021 (1)
CHEBI:134254 (1)

Metabolite Name

(-)-12-hydroxy-9,10-dihydrojasmonic acid (1)
(-)-2,7-Dolabelladiene-6beta,10alpha,18-triol (1)
(-)-8-hydroxy-11E,17-octadecadien-9-ynoic acid (1)
(-)-Cladielline (1)
(-)-Dilophol (1)
(-)-erythro-Anethole glycol 1-glucoside (1)
(-)-erythro-Anethole glycol 2-glucoside (1)
(1R,2R)-3-oxo-2-pentyl-cyclopentanehexanoic acid (1)
(1R,2R,4S)-p-Menthane-1,2,8-triol 8-glucoside (1)
(1S,2S)-3-oxo-2-pentyl-cyclopentanehexanoic acid (1)
(22E)-3beta-Hydroxy-5alpha-chola-7,22-dien-24-oic Acid (1)
(2E,4Z)-Decadienoylcarnitine (1)
(2R*,3R*)-1,2,3-Butanetriol (1)
(2R,3R,4R)-2-Amino-4-hydroxy-3-methylpentanoic acid (1)
(2S,4S)-Monatin (1)
(3S,5R,6R,7E)-3,5,6-Trihydroxy-7-megastigmen-9-one (1)
(3b,6b,8b,12a)-8,12-Epoxy-7(11)-eremophilene-6-angeloyloxy-8,12-dimethoxy-3-ol (1)
(4E,15E)-Bilirubin (1)
(4E,8E,10E-d18:3)sphingosine (1)
(5alpha,8beta,9beta)-5,9-Epoxy-3,6-megastigmadien-8-ol (1)
(6E,8E,10R,12Z)-10-Hydroxy-3-oxooctadecatrienoic acid (1)
(6E,9E,12E,15E,18E,21E)-tetracosa-6,9,12,15,18,21-hexaenoic acid (1)
(6beta,8alpha)-6-Hydroxy-7(11)-eremophilen-12,8-olide (1)
(7Z)-14-hydroxy-10,13-dioxoheptadec-7-enoic acid (1)
(9R,10S,12Z)-9,10-Dihydroxy-8-oxo-12-octadecenoic acid (1)
(9R,13R)-1a,1b-dinor-10,11-dihydro-12-oxo-15-phytoenoic acid (1)
(9S,13S)-1a,1b-dihomo-jasmonic acid (1)
(9Z,11R,12S,13S,15Z)-12,13-Epoxy-11-hydroxy-9,15-octadecadienoic acid (1)
(E)-2-Methyl-2-buten-1-ol O-beta-D-Glucopyranoside (1)
(Z)-10-Hydroxy-8-decene-4,6-diynoic acid (1)

First Public Date

2020 (1)

Study type

Transcription profiling by array (7)
ChIP-seq (1)

Release Date

2022 (26)
2023 (19)
2020 (19)
2017 (18)
2016 (16)
2024 (16)
2025 (14)
2021 (14)
2019 (14)
2018 (13)
2015 (11)
2014 (11)
2013 (9)
2009 (5)
2012 (5)
2011 (5)
2007 (4)
2008 (3)
2010 (2)
2005 (1)

Tags

xref:PubMed:33009389 (1)

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PQM-1 and Cobalt Chloride dependent gene expression changes in C. elegans

Worms were exposed to 5 mM CoCl2 at the early day 1 of adulthood stage for 6 hr and 20 hr. Untreated worms were used as controls. Worms were collected, RNA isolated and hybridized on 4x44K C. elegans arrays (Agilent) at 60C overnight, as previously described 1). Three biological replicates were used...

ORGANISM(S): Caenorhabditis elegans

2020-07-08 | GSE139562 | GEO

PQM-1 and Cobalt Chloride dependent gene expression changes in C. elegans

PRJNA580256 | ENA

Transcription profiling of 5- and 10-week bitransgenic mouse mammary glands (LH x MMTV-neu) to identify genes that may facilitate early steps of ErbB2/Neu-mediated mammary tumorigenesis.

To identify genes that may facilitate early steps of ErbB2/Neu-mediated mammary tumorigenesis, we performed comparative microarray analysis of 5- and 10-week bitransgenic mammary glands (LHxMMTV-neu) in triplicate. Experiment Overall Design: We analyzed 3 pooled RNA samples that represented 3 anima...

ORGANISM(S): Mus musculus

2007-12-01 | E-GEOD-3501 | biostudies-arrayexpress

Transcription profiling of cancer progression to study the intrinsic regulation of transforming growth factor-beta signaling in ErbB2/Neu-induced tumors

To identify early events of erbB2-induced mammary tumorigenesis, we compared datasets from 14 genechip experiments including MMTV-neu tumors, preneoplastic neu mammary gland (adjacent neu), and age-matched, wild-type control mammary glands

ORGANISM(S): Mus musculus

2007-09-04 | E-GEOD-2528 | biostudies-arrayexpress

Rapid detection of hepatitis C virus using recombinase polymerase amplification.

Not available

S-EPMC9595512 | biostudies-literature

The C. elegans adult neuronal IIS/FOXO transcriptome reveals adult phenotype regulators.

Not available

S-EPMC4708089 | biostudies-literature

Daclatasvir with sofosbuvir and ribavirin for hepatitis C virus infection with advanced cirrhosis or post-liver transplantation recurrence.

Not available

S-EPMC5069651 | biostudies-literature

Efficacy and Safety of Sofosbuvir/Velpatasvir Plus Ribavirin in Patients with Hepatitis C Virus-Related Decompensated Cirrhosis.