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ProteomicsTemporal Proteomics During Neurogenesis Reveals Large-scale Proteome and Organelle Remodeling via Selective Autophagy
Raw mass spectrometry data associated with the following paper: Temporal Proteomics During Neurogenesis Reveals Large-scale Proteome and Organelle Remodeling via Selective Autophagy. DOI:10.1016/j.molcel.2021.10.001 Related to Figure1D: AO3335-AO3345 Related to Figure4B: Day0 (AO3379-3390); Day4 (AO...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2021-08-09 | MSV000087961 | MassIVE
ProteomicsQuantitative assay of targeted proteome in trichome glandular cells using large-scale selected reaction monitoring strategy
Background: Glandular trichomes found in vascular plants are called natural cell factories because they synthesize and store secondary metabolites in the glandular cell. In order to systematically understand the metabolic processes in the glandular cells, it is indispensable to analyze the cellular ...
ORGANISM(S): Solanum Lycopersicum 
PXD012250 | panorama
ProteomicsYeast glycoproteome - pGlyco 2
Precise and large-scale characterization of glycoproteome is critical for understanding the biological functions of glycoproteins. Due to the complexity of glycosylation, the overall throughput, data quality and accessibility of site-specific glycosylation analysis are overwhelmingly lower than thos...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2017-08-15 | PXD005565 | Pride
Yeast glycoproteome 
ProteomicsMouse glycoproteome - pGlyco 2
Precise and large-scale characterization of glycoproteome is critical for understanding the biological functions of glycoproteins. Due to the complexity of glycosylation, the overall throughput, data quality and accessibility of site-specific glycosylation analysis are overwhelmingly lower than thos...
ORGANISM(S): Mus musculus (Mouse) 
2017-10-11 | PXD005553 | Pride
Mouse glycoproteome 
ProteomicsMouse glycoproteome: Heart - pGlyco 2
Precise and large-scale characterization of glycoproteome is critical for understanding the biological functions of glycoproteins. Due to the complexity of glycosylation, the overall throughput, data quality and accessibility of site-specific glycosylation analysis are overwhelmingly lower than thos...
ORGANISM(S): Mus musculus (Mouse) 
2017-09-11 | PXD005413 | Pride
Mouse glycoproteome 
ProteomicsMouse glycoproteome: Kidney - pGlyco 2
Precise and large-scale characterization of glycoproteome is critical for understanding the biological functions of glycoproteins. Due to the complexity of glycosylation, the overall throughput, data quality and accessibility of site-specific glycosylation analysis are overwhelmingly lower than thos...
ORGANISM(S): Mus musculus (Mouse) 
2017-10-12 | PXD005412 | Pride
Mouse glycoproteome 
ProteomicsMouse glycoproteome: Brain - pGlyco 2
Precise and large-scale characterization of glycoproteome is critical for understanding the biological functions of glycoproteins. Due to the complexity of glycosylation, the overall throughput, data quality and accessibility of site-specific glycosylation analysis are overwhelmingly lower than thos...
ORGANISM(S): Mus musculus (Mouse) 
2017-10-11 | PXD005411 | Pride
Mouse glycoproteome 
ProteomicsMouse glycoproteome - pGlyco 2
Precise and large-scale characterization of glycoproteome is critical for understanding the biological functions of glycoproteins. Due to the complexity of glycosylation, the overall throughput, data quality and accessibility of site-specific glycosylation analysis are overwhelmingly lower than thos...
ORGANISM(S): Mus musculus (Mouse) 
2017-10-11 | PXD005555 | Pride
Mouse glycoproteome 
ProteomicsLarge-scale identification of RNA-binding proteins
We developed a method, which enables unbiased, systematic identification of RBPs. Applying this method, we identified a large number of RBPs, adding hundreds of candidate RBPs to those previously known. In addition, we plotted the first large-scale distribution profile of RBPs after inhibition of RN...
ORGANISM(S): Homo sapiens (Human) 
2021-09-09 | PXD023162 | Pride
Rna-binding proteins(rbps)  lc-msms  large-scale 
ProteomicsApplication of de novo sequencing to large-scale complex proteomics datasets
Dependent on concise, pre-defined protein sequence databases, traditional search algorithms perform poorly when analyzing mass spectra derived from wholly uncharacterized protein products. Conversely, de novo peptide sequencing algorithms can interpret mass spectra without relying on reference datab...
ORGANISM(S): Bos taurus (Bovine) Saccharomyces cerevisiae (Baker's yeast) 
2016-01-12 | PXD003317 | Pride
De novo peptide sequencing Ms/ms Large-scale computational analysis Yeast Bos Mass spectrometry Proteomics 
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