Larson D D - OmicsDI

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Unknown (1428)
Transcriptomics (503)
Genomics (47)
Metabolomics (47)
Proteomics (32)
Models (1)

Organisms

Homo sapiens (197)
Mus musculus (91)
Saccharomyces cerevisiae (45)
Arabidopsis thaliana (28)
Drosophila melanogaster (19)
Rattus norvegicus (18)
Bifidobacterium breve UCC2003 (13)
Daphnia magna (11)
Caenorhabditis elegans (11)
Vibrio harveyi (8)
Pristionchus pacificus (8)
Bacillus subtilis (8)
Gallus gallus (6)
Danio rerio (5)
Enchytraeus albidus (4)
Penicillium chrysogenum (4)
Bacillus cereus ATCC 14579 (4)
Streptococcus suis (4)
Schizosaccharomyces pombe (4)
Escherichia coli (4)
Moraxella catarrhalis BBH18 (3)
Lepidium sativum (3)
Mycobacterium tuberculosis (3)
Bos taurus (3)
Lactococcus lactis (2)
Aspergillus niger (2)
Zea mays (2)
Staphylococcus aureus (2)
Glycine max (2)
Escherichia coli str. K-12 substr. MG1655 (2)

Repository

biostudies-arrayexpress (538)
MetaboLights (46)
pride (16)
EGA (15)
MassIVE (13)
PanoramaPublic (2)
Cell Collective (1)
GNPS (1)
PAXDB (1)

Tissue

Fibroblast (2)
Heart (2)
Bile duct (1)
Blood serum (1)
Bodily fluid (1)
Colon (1)
Epithelial cell (1)
Liver (1)
Lung (1)
Ovarian serous carcinoma cell (1)
Tooth (1)
Urine (1)
Venom (1)

Disease

Acute myeloid leukemia (8)
Ovarian tumor (2)
Normal (2)
12 DAI with PepMV-EU isolate (1)
Giant cell glioblastoma (1)
ARR1-SRDX (1)
Locally advanced rectal cancer (1)
Temporal lobe epilepsy (1)
Cancer (1)
Collagen induced arthritis (1)
Type 1 diabetes mellitus (DM-1) (1)
Neurofibromatosis type 1 (1)
Breast cancer (1)
Cardiovascular system disease (1)
Cholangiocarcinoma (1)
Influenza (1)
Joint inflammation (1)
Malignant neoplasm of ovary (1)

Technology Type

Mass spectrometry (43)
Mass Spectrometry (16)
Shotgun proteomics (11)
Bottom-up proteomics (4)
Mass spectrometry assay (3)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2500 (1)
Data-independent acquisition (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (12)
Illumina HiSeq 2500 (9)
NextSeq 500 (8)
Illumina HiSeq 2000 (5)
Illumina HiSeq 4000 (4)
BAS-5000 [FUJIFILM] (3)
Generation III Scanner (2)
Illumina Genome Analyzer II (2)
Scanning hardware (2)
Orbitrap Fusion Lumos (2)
Q Exactive (2)
Synapt MS (2)
Element AVITI (1)
10X Chromium Controller (1)
Agilent G2565BA scanner (1)
Agilent Hybridization Oven (1)
Affymetrix 428 (1)
ScanArray Lite [PerkinElmer] (1)
ScanArray 5000 [PerkinElmer] (1)
GeneChip Scanner 3000 [Affymetrix] (1)
G2565AA DNA microarray scanner [Agilent] (1)
Illumina Genome Analyzer IIx (1)
Chemostat (1)
ScanArray Express HT [PerkinElmer] (1)
ScanArray Express HT (1)
NextSeq 2000 (1)
DNBSEQ-G400 (1)
Illumina MiSeq (1)
LTQ FT (1)
MaXis (1)

Publication Date

2012 (80)
2010 (70)
2013 (64)
2011 (53)
2014 (52)
2015 (47)
2008 (42)
2009 (35)
2007 (24)
2023 (21)
2016 (19)
2021 (17)
2022 (15)
2018 (11)
2024 (10)
2020 (10)
2026 (9)
2017 (8)
2005 (8)
2025 (5)
2006 (5)
2019 (4)
2004 (4)
2003 (2)

UNIPROT ID/AC

14310_SOLLC (1)
14331_SOLLC (1)
14332_SOLLC (1)
14333_SOLLC (1)
14334_SOLLC (1)
14335_SOLLC (1)
14336_SOLLC (1)
14337_SOLLC (1)
14338_SOLLC (1)
14339_SOLLC (1)
4081.Solyc00g017210.1.1 (1)
4081.Solyc00g036540.1.1 (1)
4081.Solyc00g042140.1.1 (1)
4081.Solyc01g006980.2.1 (1)
4081.Solyc01g008090.2.1 (1)
4081.Solyc01g008330.2.1 (1)
4081.Solyc01g008410.1.1 (1)
4081.Solyc01g010580.2.1 (1)
4081.Solyc01g012700.2.1 (1)
4081.Solyc01g016990.1.1 (1)
4081.Solyc01g059760.1.1 (1)
4081.Solyc01g066700.2.1 (1)
4081.Solyc01g068020.2.1 (1)
4081.Solyc01g074000.2.1 (1)
4081.Solyc01g080600.2.1 (1)
4081.Solyc01g081180.1.1 (1)
4081.Solyc01g086800.2.1 (1)
4081.Solyc01g086820.2.1 (1)
4081.Solyc01g087710.2.1 (1)
4081.Solyc01g088410.2.1 (1)

CHEBI ID

CHEBI:27897 (16)
CHEBI:28044 (14)
CHEBI:16811 (13)
CHEBI:30769 (13)
CHEBI:18257 (12)
CHEBI:26271 (12)
CHEBI:17596 (11)
CHEBI:29016 (11)
CHEBI:15741 (10)
CHEBI:16335 (10)
CHEBI:17750 (10)
CHEBI:28300 (10)
CHEBI:16235 (9)
CHEBI:18237 (9)
CHEBI:22660 (9)
CHEBI:15354 (8)
CHEBI:16750 (8)
CHEBI:17509 (8)
CHEBI:17533 (8)
CHEBI:17822 (8)
CHEBI:18186 (8)
CHEBI:18211 (8)
CHEBI:24898 (8)
CHEBI:25017 (8)
CHEBI:16027 (7)
CHEBI:16411 (7)
CHEBI:16457 (7)
CHEBI:16610 (7)
CHEBI:16708 (7)
CHEBI:17015 (7)

Metabolite Name

Ornithine (6)
Phenylalanine (6)
Proline (6)
Tryptophan (6)
Creatine (5)
Glutamine (5)
Isoleucine (5)
Leucine (5)
Succinic acid (5)
Adenine (4)
Aspartic acid (4)
Cholic acid (4)
Citric acid (4)
Methionine (4)
Serine (4)
Threonine (4)
Tryptophan (4)
Tyrosine (4)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (3)
Arginine (3)
Chitobiose (3)
Chitotriose (3)
Citric acid (3)
Citrulline (3)
Cysteine (3)
Deoxycholic acid (3)
Ectoine (3)
Guanine (3)
Indoleacetic acid (3)
Tris(2-butoxyethyl) phosphate (3)

Study type

Transcription profiling by array (355)
ChIP-seq (25)
Comparative genomic hybridization by array (24)
RNA-seq of coding RNA (22)
ChIP-chip by tiling array (17)
ChIP-chip by array (14)
Other (12)
Unknown experiment type (10)
RNA-seq of coding RNA from single cells (10)
RNA-seq of non coding RNA (8)
MicroRNA profiling by array (7)
DNA-seq (5)
Methylation profiling by array (4)
Human - High-throughput sequencing (2)
Animal - High-throughput sequencing (2)
RIP-seq (2)
Methylation profiling by high throughput sequencing (2)
Transcription profiling by SAGE (1)
MNase-seq (1)
Human - Two-color microarray (1)
Human - Single-cell sequencing (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
RNAi profiling by array (1)
Genotyping by array (1)
CLIP-seq (1)
Transcription profiling by RT-PCR (1)
MicroRNA profiling by high throughput sequencing (1)
4C (1)
ATAC-seq (1)

Release Date

2021 (145)
2022 (144)
2018 (127)
2024 (126)
2012 (123)
2023 (122)
2013 (121)
2014 (113)
2010 (104)
2015 (104)
2011 (96)
2020 (95)
2025 (90)
2016 (89)
2019 (87)
2017 (83)
2008 (62)
2009 (61)
2007 (30)
2026 (15)
2006 (9)
2005 (8)
2004 (5)
2003 (3)
2002 (2)
2001 (1)
2000 (1)

Lab affiliation

Barnett Institute of Chemical and Biological Analysis and Department of Chemistry & Chemical Biology, Northeastern University, Boston, MA, USA. (1)
BioArCh, Department of Archaeology, University of York (1)
Biological and Life Sciences, Lancaster University (1)
Clinical Research Division, Fred Hutchinson Cancer Research Center (1)
Department of Clinical Chemistry and Transfusion Medicine at Institute of Biomedicine, SU Sahlgrenska 413 45 Gothenburg, Sweden (1)
Department of Clinical Chemistry and Transfusion Medicine, Institute of Biomedicine, University of Gothenburg, Gothenburg, Sweden (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, USA (1)
Department of Laboratory Medicine, Sahlgrenska academy, University of Gothenburg, Gothenburg, Sweden. Laboratory of Clinical Chemistry, Sahlgrenska University Hospital, Gothenburg, Sweden. (1)
Department of Molecular Sciences, Macquarie University, Sydney, NSW, Australia; Biomolecular Discovery Research Centre, Macquarie University, Sydney, NSW, Australia (1)
Eppley Institute University of Nebraska Medical Center USA (1)
Proteomics Core Facility, University of Gothenburg (1)
Proteomics Core Facility, University of Gothenburg, Sweden (1)
Proteomics, Leibniz-Institut für analytische Wissenschaften -ISAS - e.V., Germany (1)
University of Colorado Anschutz Medical Campus (1)
Zoonosis Science Center, Department of Medical Sciences, Uppsala University, Uppsala SE-75185, Sweden (1)

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Metabolomics to elucidate the effects of novel sustainable feed additives in the feed of farmed salmon (HoloFood Trial D - fermented seaweed open water-dose response)

Testing the effect of seaweed as a novel cost-efficient feed source for Atlantic salmon feed. Fermentation of novel raw materials for fish feed is a new practice with little prior experience of direct relevance to aquaculture and fish farming. In Trial D, an alternative marine compound is include...

2023-06-13 | MTBLS6733 | MetaboLights

Understanding Vitamin D resistance using array comparative genomic hybridization

Vitamin D is the strongest known natural anti-proliferative. A large number of studies in a wide spectrum of cancers, including epidemiological, in vitro and animal models, demonstrate that the active form of Vitamin D has anti-cancer benefits, affecting both progression and metastasis. Alike the ro...

ORGANISM(S): Homo sapiens

2008-05-31 | E-GEOD-9887 | biostudies-arrayexpress

Ribose utilization by the human commensal Bifidobacterium breve UCC2003

Growth of B. breve UCC2003 on ribose leads to the transcriptional induction of the rbsACBDK gene cluster. Generation and phenotypic analysis of an rbsA insertion mutant established that the rbs gene cluster is essential for ribose utilization, and that its transcription is likely regulated by a LacI...

ORGANISM(S): Bifidobacterium breve UCC2003

2010-05-19 | E-GEOD-17325 | biostudies-arrayexpress

Calcium plus vitamin D supplementation and the risk of nonmelanoma and melanoma skin cancer: post hoc analyses of the women's health initiative randomized controlled trial.

Not available

S-EPMC3157967 | biostudies-literature

Factors associated with D-dimer levels in HIV-infected individuals.

Not available

S-EPMC3953205 | biostudies-literature

Transcription profiling of human intestinal cells (Caco-2) and tissues from all intestinal segments (duodenum, jejunum, ileum, colon)

Affymetrix U95Av2 expression data from human intestinal cells (Caco-2) and tissues from all intestinal segments (duodenum, jejunum, ileum, colon). Entries contain the search terms glycosylase, phosphorylase, cytochrome or nucleoside, which were relevant to our search for enzymes capable of cleaving...

ORGANISM(S): Homo sapiens

2007-06-21 | E-GEOD-1862 | biostudies-arrayexpress

Efficacy and safety of D,L-3-hydroxybutyrate (D,L-3-HB) treatment in multiple acyl-CoA dehydrogenase deficiency.

Not available

S-EPMC7200590 | biostudies-literature

Oxidative damage of SP-D abolishes control of eosinophil extracellular DNA trap formation.

Not available

S-EPMC6450398 | biostudies-literature

Vitamin D and Weight Cycling: Impact on Injury, Illness, and Inflammation in Collegiate Wrestlers.

Not available

S-EPMC5188430 | biostudies-literature

Vitamin D in human serum and adipose tissue after supplementation.