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biostudies-arrayexpress (231)
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Mass Spectrometry (50)
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Publication Date

2013 (42)
2010 (25)
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CHEBI ID

CHEBI:16010 (2)
CHEBI:17234 (2)
CHEBI:17822 (2)
CHEBI:18186 (2)
CHEBI:24898 (2)
CHEBI:25017 (2)
CHEBI:25094 (2)
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CHEBI:16135 (1)
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CHEBI:16310 (1)
CHEBI:16335 (1)
CHEBI:16449 (1)

Metabolite Name

Glucose (2)
Glutamate (2)
Phenylalanine (2)
Threonine (2)
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(2,3-dihydroxy-3-methylbutanoate) (1)
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(queuine) (1)
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3-aminoadipic acid (1)
5-Hepten-2-one, 6-methyl- (1)
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Study type

Transcription profiling by array (122)
RNA-seq of coding RNA (29)
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Other (11)
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1997 (1)

Lab affiliation

Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (6)
Biological Chemistry Section, National Institute of Dental and Craniofacial Research, National Institutes of Health, Bethesda, Maryland, United States (3)
Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, USA. (2)
1. ARC Centre of Excellence in Plant Cell Walls, School of BioSciences, The University of Melbourne, Melbourne, VIC 3010, Australia 2. Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94702, USA (1)
1. School of Biosciences, The University of Melbourne, Melbourne, VIC 3010, Australia 2. Joint BioEnergy Institute and Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA (1)
1. Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Parkville, 3052, Victoria, Australia and Department of Medical Biology, The University of Melbourne, Royal Parade, Parkville, 3052, Victoria, Australia (1)
1Rosalind & Morris Goodman Cancer Institute, McGill University, Montreal, QC, H3A 1A3, Canada 2Department of Biochemistry, McGill University, Montreal, QC, H3G 1Y6, Canada (1)
Basic Sciences, College of Veterinary Medicine (1)
Cambridge University (1)
Center for Cancer Research, Massachusetts General Hospital, Boston MA, USA;Department of Chemistry and Chemical Biology, Harvard University, Cambridge MA, USA. (1)
Department Chair • MCG - Department of Cellular Biology & Anatomy, Augusta University (1)
Department of Anesthesiology and Critical Care Medicine Children’s Hospital of Philadelphia University of Pennsylvania Philadelphia, Pennsylvania (1)
Department of Applied Chemistry, Institute of Natural Science, Global Center for Pharmaceutical Ingredient Materials, Kyung Hee University, Yongin, 17104, South Korea. (1)
Department of Biochemistry University of Cambridge Cambridge UK (1)
Department of Chemistry, Univeristy of Kansas, Lawrence, KS, USA (1)
Department of Chemistry, University of Kansas, Lawrence KS, United States (1)
Department of Chemistry, University of Kansas, Lawrence, KS, United States (1)
Department of Medicine, Vanderbilt University Medical Center, United States (1)
Department of Organismal Systems & Bioresilience, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA (1)
Department of Pathology and Medicine, University of California at San Diego, La Jolla, CA 92093, USA (1)
Department of Radiation Oncology, Weill Cornell Medicine, New York, NY, USA; Department of Pathology, University of Massachusetts Medical School, Worcester, MA, USA. (1)
Departments of Radiation Oncology, The University of Michigan Medical School, Ann Arbor, Michigan 48109. (1)
Director Proteomics & Peptide Synthesis Core Assistant Research Scientist, Dept. of Biological Chemistry University of Michigan Medical School NEW location: C570D MSRBII 1150 West Medical Center Drive Ann Arbor, MI 48109 (1)
Drug Discovery Moffitt Cancer Center Tampa, FL, USA (1)
Ecology and Evolutionary Biology, University of Kansas USA (1)
Eppley Institute University of Nebraska Medical Center (1)
Eppley Institute University of Nebraska Medical Center Omaha, Nebraska, USA (1)
Eppley Institute University of Nebraska Medical School USA (1)
Eppley Institute, University of Nebraska Medical Center, United States (1)
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) (1)

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Mus musculus strain:CC X FVB/N F1

Mus musculus strain:CC X FVB/N F1 Raw sequence reads

PRJNA1122577 | ENA

Profiling the level of N-glycan structural heterogeneity in Arabidopsis N-glycoproteins

In this study, we use hydrophilic enrichment, high-resolution tandem mass spectrometry with complimentary and triggered fragmentation to profile Arabidopsis N-glycopeptides. A total of 492 N-glycosites were identified from 324 Arabidopsis proteins with extensive N-glycan structural heterogeneity rev...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2017-12-18 | PXD006270 | Pride

Meta-transcriptomic analysis of the response of river biofilms to pharmaceutical products using anonymous DNA microarray

Low concentrations of pharmaceutical compounds were shown to induce transcriptional responses in isolated microorganisms, which could have consequences on ecosystem dynamics. In order to test if these transcriptional responses could also be observed in complex river microbial communities, biofilm re...

ORGANISM(S): environmental samples

2010-07-06 | E-GEOD-20501 | biostudies-arrayexpress

Identifying crossover locations in Arabidopsis thaliana wild type and asy1 Col-0 × Ws-4 F2 populations using genotyping-by-sequencing

Genomic DNA from 187 wild type and 169 asy1 Col-0 x Ws-4 F2 individuals was extracted using CTAB and used to generate sequencing libraries as described (Lawrence et al, 2019 Current Biology). Sequencing data was analysed to identify crossovers using the TIGER pipeline as previously described (Rowan ...

ORGANISM(S): Arabidopsis thaliana

2020-05-18 | E-MTAB-8715 | biostudies-arrayexpress

Identifying crossover locations in Arabidopsis thaliana asy1/+ Col × Ler F2 populations using genotyping-by-sequencing

Genomic DNA from 191 asy1/+ Col x Ler F2 individuals was extracted using CTAB and used to generate sequencing libraries as described (Lawrence et al, 2019 Current Biology). Sequencing data was analysed to identify crossovers using the TIGER pipeline as previously described (Rowan et al, 2015 G3 (Bet...

ORGANISM(S): Arabidopsis thaliana

2020-05-18 | E-MTAB-8725 | biostudies-arrayexpress

Plant UDP-N-acetylglucosamine (UDP-GlcNAc) transporter (UGNT1) glycopeptide analysis

Glycosylation reactions require activated glycosyl donors in form of nucleotide sugars to drive processes such as post-translational protein modifications, glycolipid and polysaccharide biosynthesis. Most of these reactions occur in the Golgi requiring cytosolic-derived nucleotide sugars, which are ...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2018-09-24 | PXD006635 | Pride

Udp-n-acetylglucosamine Glycopeptide Nucleotide sugar transporters

N-acetyl-S-(N,N-diethylcarbamoyl) cysteine in rat nucleus accumbens, medial prefrontal cortex, and in rat and human plasma after disulfiram administration.

Not available

S-EPMC4410022 | biostudies-literature

Phenomenology and content of the inhaled N, N-dimethyltryptamine (N, N-DMT) experience.

Not available

S-EPMC9130218 | biostudies-literature

Validation data for Lawrence Livermore Microbial Detection Arrays

This SuperSeries is composed of the following subset Series: GSE24626: Validation data for Lawrence Livermore Microbial Detection Array version 2 GSE24699: Validation data for Lawrence Livermore Microbial Detection Array version 1 Refer to individual Series

ORGANISM(S): Bovine viral diarrhea virus 1

2010-10-15 | E-GEOD-24700 | biostudies-arrayexpress

Simultaneous N-deglycosylation and digestion of human and chicken proteins on S-Traps

N-linked glycosylation is an important post-translational modification that is difficult to identify and quantify in traditional bottom-up proteomics experiments. Enzymatic deglycosylation of proteins by peptide:N-glycosidase F (PNGase F) prior to digestion and subsequent mass spectrometry analysis ...

ORGANISM(S): Homo sapiens (Human) Gallus gallus (Chicken)

2023-02-09 | PXD037921 | Pride

Human Deglycosylation Chicken S-trap Lc-ms/ms

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