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TranscriptomicsAffymetrix SNP array data for low-grade astrocytoma samples
Copy number analysis of 21 paediatric low-grade astrocytomas identified a discrete copy number gain of 1.9Mb in chromosome band 7q34. The gain was present in 12/14 cerebellar pilocytic astrocytomas. Subsequent analysis of tumour cDNA indentified a novel gene fusion between KIAA1549 and BRAF in these...
ORGANISM(S): Homo sapiens 
2010-04-09 | E-GEOD-14960 | biostudies-arrayexpress
GenomicsGenome-wide identification of putative cis-regulatory elements through epigenetic profiling in zebrafish
In this study, we have applied ChIP-Seq to identify putative regulatory elements throughout the zebrafish genome. For this purpose we identified sequences within the zebrafish genome that associate with H3K4me1 and H3K4me3, which are epigenetic modifications known to be associated with active cis-r...
ORGANISM(S): Danio rerio 
2011-02-25 | E-GEOD-20600 | biostudies-arrayexpress
TranscriptomicsHL_Arabidopsis_gpa1-4
Arabidopsis thaliana plants from the genotypes Col-0 and gpa1-4 (knock-out) were used. They were grown in a growth chamber for 5 weeks in short day (8/16 light/dark cycle at 22 degrees, 150 umol*m2*s-1 (fluorescent lights) and 55% RH in 100-ml pots with Levingtons L2+S. On the day of the experiment,...
ORGANISM(S): Arabidopsis thaliana 
2014-02-10 | E-MTAB-2050 | biostudies-arrayexpress
TranscriptomicsHL_Arabidopsis_AtrbohF
Arabidopsis thaliana plants from the genotypes Col-0 and AtrbohF (knock-out) were used. They were grown in a growth chamber for 5 weeks in short day (8/16 light/dark cycle) at 22 degrees, 150 umol*m2*s-1 (fluorescent lights) and 55% RH in 100-ml pots with Levingtons L2+S. On the day of the experimen...
ORGANISM(S): Arabidopsis thaliana 
2014-02-10 | E-MTAB-2049 | biostudies-arrayexpress
TranscriptomicsHL_Arabidopsis_snrkD
Arabidopsis thaliana plants from the genotypes Col-0 and snrk2.2-2.3 (snrkD, double knock-out) were used. They were grown in a growth chamber for 5 weeks in short day (8/16 light/dark cycle) at 22 degrees, 150 umol*m2*s-1 (fluorescent lights) and 55% RH in 100-ml pots with Levingtons L2+S. On the da...
ORGANISM(S): Arabidopsis thaliana 
2014-02-10 | E-MTAB-2052 | biostudies-arrayexpress
TranscriptomicsHL_Arabidopsis_ost1-1
Arabidopsis thaliana plants from the genotypes Ler and ost1-1 (knock-out) were used. They were grown in a growth chamber for 5 weeks in short day (8/16 light/dark cycle) at 22 degrees, 150 umol*m2*s-1 (fluorescent lights) and 55% RH in 100-ml pots with Levingtons L2+S. On the day of the experiment, ...
ORGANISM(S): Arabidopsis thaliana 
2014-02-10 | E-MTAB-2051 | biostudies-arrayexpress
TranscriptomicsHL_Arabidopsis_ABA2OE
Arabidopsis thaliana plants from the genotypes Col-0 and ABA2OE (35S:ABA2 overexpressor in Col-0 background) were used. They were grown in a growth chamber for 5 weeks in short day (8/16 light/dark cycle) at 22 degrees, 150 umol*m2*s-1 (fluorescent lights) and 55% RH in 100-ml pots with Levington's ...
ORGANISM(S): Arabidopsis thaliana 
2014-02-10 | E-MTAB-2048 | biostudies-arrayexpress
TranscriptomicsHL_Arabidopsis_abi2-2T
Arabidopsis thaliana plants from the genotypes Col-0 and abi2-2T (triple mutant abi1-2/abi2-2/hab1-1) were used. They were grown in a growth chamber for 5 weeks in short day (8/16 light/dark cycle) at 22 degrees, 150 umol*m2*s-1 (fluorescent lights) and 55% RH in 100-ml pots with Levingtons L2+S. On...
ORGANISM(S): Arabidopsis thaliana 
2014-02-10 | E-MTAB-2047 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of trf3 morpholino treated zebrafish embryos to identify Trf3 target genes
To identify Trf3 target genes, we performed expression profiling in trf3 MO-treated embryos (at 6 hpf) using a zebrafish oligonucleotide microarray representing ~12,800 genes.
ORGANISM(S): Danio rerio 
2007-10-29 | E-MEXP-1279 | biostudies-arrayexpress
UnknownStructural insight into how Streptomyces coelicolor maltosyl transferase GlgE binds α-maltose 1-phosphate and forms a maltosyl-enzyme intermediate.
Not available
S-EPMC4048318 | biostudies-literature
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