Lc-esi- ms - OmicsDI

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Proteomics (1964)
Unknown (1085)
Metabolomics (571)
Genomics (16)
Other (7)
Transcriptomics (4)
Clinical (1)

Organisms

Saccharomyces cerevisiae (1871)
Rattus norvegicus (1871)
Staphylococcus aureus (11)
Homo sapiens (9)
Theobroma cacao (4)
Cutibacterium acnes KPA171202 (3)
standard reference vector pMCS (2)
Moorena bouillonii (2)
Carica papaya (2)
Cyanobacteriota (2)
Streptococcus agalactiae ATCC 13813 (2)
Enterococcus faecalis (2)
Mus musculus (2)
Halobacterium salinarum NRC-1 (2)
Corynebacterium glutamicum (1)
Nitrospirillum amazonense (1)
Rattus norvegicus (1)
Metabacillus indicus (1)
Remus (1)
Amycolatopsis sp. AA4 (1)
Trichoderma sp. (1)
Rattus rattus (1)
Saccharomyces cerevisiae (1)
cellular organisms (1)
Capilliphycus salinus ALCB114379 (1)
Data (1)
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Gallus gallus (1)

Organisms

Nitrospirillum amazonense (1)
Xanthomonas campestris (1)
Haliotis discus hannai (1)
Raphanus sativus (1)
Danio rerio (1)
Arabidopsis thaliana (1)
Bacillus velezensis (1)
Rattus norvegicus (1)
Homo sapiens (1)

Repository

pride (1871)
MetaboLights (476)
GNPS (93)
MassIVE (66)
iProX (21)
ENA (16)
jPOST (5)
PeptideAtlas (4)
geo (3)
GPMDB (2)
NODE (2)
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biostudies-arrayexpress (1)

Tissue

Cell culture (369)
Brain (101)
Epithelial cell (87)
Plant cell (71)
Blood plasma (63)
Leaf (57)
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Liver (46)
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Blood serum (29)
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Blood (28)
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Urine (16)
Macrophage (15)
Stem cell (15)
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T cell (15)
Cerebrospinal fluid (14)
Embryo (13)
B cell (13)
Prokaryotic cell (12)

Disease

Breast cancer (42)
Disease free (37)
Colon cancer (21)
Cardiovascular system disease (12)
Brain cancer (11)
Acute leukemia (10)
Obesity (9)
Chagas disease (9)
Malignant neoplasm of ovary (9)
COVID-19 (9)
Cervix carcinoma (8)
Alzheimer's disease (8)
Cystic fibrosis (7)
Post-traumatic stress disorder (6)
Brain glioblastoma multiforme (6)
Prostate adenocarcinoma (6)
Prostate cancer (6)
Lymphoma (6)
Parkinson's disease (6)
Tuberculosis (6)
Glioblastoma (6)
Type 2 diabetes mellitus (6)
Hepatocellular carcinoma (5)
Non-small cell lung carcinoma (5)
Severe acute respiratory syndrome (5)
Osteosarcoma (5)
Chronic lymphocytic leukemia (5)
Melanoma (5)
Not Available (2)
Malignant neoplasm of colon (1)

Technology Type

Mass Spectrometry (1871)
Shotgun proteomics (993)
Bottom-up proteomics (364)
Mass spectrometry (337)
Affinity purification coupled with mass spectrometry proteomics (194)
Data-dependent acquisition (192)
Gel-based experiment (158)
Mass spectrometry assay (138)
Data-independent acquisition (92)
SWATH MS (79)
Top-down proteomics (79)
HDMSE (35)
Chemical cross-linking coupled with mass spectrometry proteomics (33)
SRM/MRM (30)
MSE (21)
All-ion fragmentation (12)
Mass spectrometry imaging (8)
DiaPASEF (8)
RNA mass spectrometry (7)
Metaproteomics (5)
Affinity proteomics (5)
NMR spectroscopy (3)
Proteogenomics (3)
Glycoproteomics (2)
Immunopeptidomics (2)
NMR spectroscopy assay (1)

Instrument Platform

MaXis (27)
Impact HD|MS:1002667 (17)
Q Exactive (16)
Orbitrap Fusion (9)
Q Exactive HF-X (8)
6530A Q-TOF LC/MS (8)
Q Exactive HF (6)
Q Exactive Plus (5)
LC-ESI-QTof-MS/MS (4)
Amazon SL (Bruker Daltonics amaZon series) (4)
6560 Q-TOF LC/MS (4)
6520A Quadrupole Time-of-Flight LC/MS (3)
Unknown (3)
Agilent software|1000689 (2)
6470 Triple Quadrupole LC/MS (Agilent instrument model) (2)
MicrOTOF-Q II (2)
DART-TOF-MS and LC-ESI-QTOF (2)
Easy n-LC and LTQ Orbitrap XL mass spectrometers (both from Thermo Fisher, San Jose, CA, USA) (2)
Nano-electrospray source, were used for nano LC-MS/MS (2)
6546 Q-TOF LC/MS (Agilent instrument model) (2)
TEMPUS TOF (1)
Orbitrap Q Exactive HF (1)
Maxis Impact Q-TOF (1)
AmaZon Speed (1)
TSQ Quantum Ultra (1)
6520B Q-TOF LC/MS (1)
Orbitrap Exploris 240 (1)
MicrOTOF-Q (1)
Q-Tof micro (1)
LTQ Orbitrap Elite (1)

Publication Date

2025 (371)
2026 (342)
2022 (306)
2024 (274)
2023 (265)
2021 (226)
2020 (178)
2019 (143)
2018 (137)
2017 (105)
2016 (75)
2015 (49)
2014 (31)
2013 (11)
2006 (3)
2012 (2)
2009 (1)
2010 (1)

UNIPROT ID/AC

Q921C1 (2)
P03899 (2)
E9PXG1 (2)
Q9JKF6 (2)
Q99PU5 (2)
Q99JP6-2 (2)
Q8R191 (2)
Q8CHX7 (2)
Q8CA95-3 (2)
Q8C8N2 (2)
Q8BLE7 (2)
Q8BG39 (2)
Q80XD3 (2)
Q80U23 (2)
Q80T41 (2)
Q7TPM6 (2)
Q6XE40 (2)
Q60771 (2)
Q50DZ7 (2)
Q3V1R3 (2)
Q3UHJ2 (2)
Q3TZE2 (2)
Q3TYL3 (2)
Q3TXX4 (2)
Q1MXF8 (2)
P31650 (2)
P23242 (2)
O35316 (2)
M1VMU3 (2)
G3X9Y1 (2)

ENSEMBL ID

ENSMUSP00000141097 (2)
ENSMUSG00000072849 (1)
ENSMUSG00000098557 (1)

CHEBI ID

CHEBI:16704 (86)
CHEBI:16335 (83)
CHEBI:17368 (83)
CHEBI:30769 (79)
CHEBI:16750 (75)
CHEBI:16708 (74)
CHEBI:17295 (73)
CHEBI:15891 (72)
CHEBI:16015 (72)
CHEBI:17596 (72)
CHEBI:17509 (69)
CHEBI:15741 (68)
CHEBI:15756 (68)
CHEBI:17568 (67)
CHEBI:16828 (67)
CHEBI:7916 (65)
CHEBI:17562 (64)
CHEBI:15428 (63)
CHEBI:15971 (63)
CHEBI:16040 (62)
CHEBI:17154 (62)
CHEBI:17750 (61)
CHEBI:16467 (60)
CHEBI:17895 (60)
CHEBI:28044 (59)
CHEBI:28842 (58)
CHEBI:16027 (58)
CHEBI:16919 (58)
CHEBI:17203 (57)
CHEBI:17053 (57)

Metabolite Name

Hypoxanthine (102)
Adenosine (91)
Adenine (87)
Uridine (87)
Inosine (85)
Uracil (81)
L-Phenylalanine (79)
Betaine (77)
Creatine (77)
Cytidine (75)
Guanosine (75)
Xanthine (69)
Creatinine (68)
L-Histidine (67)
L-Tyrosine (66)
Taurine (65)
L-Proline (64)
L-Arginine (62)
L-Leucine (62)
Choline (61)
Cytosine (61)
L-Tryptophan (61)
Thymine (60)
Xanthosine (59)
Guanine (58)
Thymidine (58)
Riboflavin (57)
L-Glutamine (56)
L-Methionine (56)
Pantothenic acid (55)

First Public Date

2024 (3)
2023 (3)
2022 (3)
2020 (2)
2019 (2)
2025 (1)
2017 (1)
2016 (1)

Modification

15.994915 (11)
42.010565 (9)
-17.026549 (8)
4-tetrahydrothiazine-3-carboxylic acid (6)
45.029395 (5)
58.005479 (4)
4x(15)N labeled L-arginine (4)
Not available (4)
57.021464 (3)
56.026215 (2)
59.036279 (2)
10.008269 (2)
Light form - site K (1)
47.036105 (1)
32.056407 (1)
Heavy form - site K (1)
4'-dihydroxyphenylalanine (1)
3x(2)H labeled N6-acetyl-L-lysine (1)
-18.010565 (1)
2x(15)N labeled L-lysine (1)
4 (1)
N6-dimethyl-L-lysine (1)
+3amu) (1)

Study status

Recruiting (1)

Study type

Transcription profiling by array (1)
Observational (1)

Release Date

2021 (127)
2022 (114)
2020 (99)
2023 (95)
2019 (83)
2025 (81)
2024 (74)
2018 (69)
2017 (61)
2016 (47)
2014 (38)
2015 (37)
2013 (29)
2011 (29)
2010 (25)
2009 (23)
2008 (17)
2012 (16)
2026 (12)
2007 (3)
2006 (3)
2005 (3)
2003 (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (21)
Department of Animal and Poultry Sciences and the School of Neuroscience, Virginia Tech, Blacksburg, VA, USA (21)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (20)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (16)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (11)
North Carolina State University (8)
Biomolecular characterization unit, Center for Sustainable Resource Science, RIKEN (7)
University of Sydney (7)
Instituto de Biotecnología, Grupo de Bioquímica y Parasitología Molecular, Departamento de Parasitología, Universidad de Granada, Granada, Spain. (6)
LMU Munich Plant Biochemistry and Physiology, Germany (6)
Department of Entomology,Institute of Vegetables and Flowers,Chinese Academy of Agriculture Sciences,Beijing,100081,China (6)
Institute of Microbiology - BioCeV, Academy of Sciences of the Czech Republic (6)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and Signalling Research Centres BIOSS and CIBSS, University of Freiburg, 79104 Freiburg im Breisgau, Germany (5)
CRUK Scotland Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (5)
Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, 9220 Aalborg E, Denmark (5)
Texas Tech University (5)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (5)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (5)
Proteomics of Stem Cells and Cancer, German Cancer Research Center (DKFZ), Heidelberg, Germany (5)
Proteomics Center, Erasmus MC (5)
Erasmus MC (5)
State Key Laboratory of Genetic Engineering, Department of Biochemistry, School of Life Sciences, Fudan University, Shanghai 200438, China (5)
1 Department of Cardiac Surgery, Fujian Medical University Union Hospital, Fuzhou, China 2 Department of Toxicology, Fujian Center for Evaluation of New Drug, Fujian Medical University, Fuzhou, China (4)
Translational Biomarker Group, University of Geneva, Geneva, Switzerland (4)
Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, United States (4)
Centre for Cancer Cell & Molecular Biology Barts Cancer Institute Queen Mary University of London Charterhouse Square London EC1M 6BQ U.K. (4)
Genomics Research Center, Academia Sinica, Taipei, Taiwan (4)
Department of Cardiovascular Medicine, Center for Circadian Metabolism and Cardiovascular Disease, Southwest Hospital, Army Medical University; Chongqing, China. (4)
Emmy-Noether Research Group Cellular Proteomics and Metabolic Signaling Institute for Diabetes and Obesity Helmholtz Diabetes Center Germany (4)
Biotechnology Research Center, No.2 Tiansheng Road, BeiBei District, Chongqing, 400715,P.R.China (4)

Location

Germany (1)

Tags

xref:PubMed:33324213 (1)
xref:PubMed:34123281 (1)
xref:PubMed:162125 (1)
xref:PubMed:32070416 (1)

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Proteomic characterization of bacteriophage peptides from mastitis producer Staphylococcus aureus by LC-ESI-MS/MS and their bacteriophage phylogenomic analysis

The present work describes LC-ESI-MS/MS analyses of tryptic digestion peptides from phages that infect Staphylococcus aureus-causing mastitis, and isolated from dairy products. A total of 1935 non-redundant peptides belonging to 1282 proteins were identified and analyzed. Among them, 80 staphylococc...

ORGANISM(S): Staphylococcus aureus

2021-03-25 | PXD023530 | Pride

A semi-virtual two dimensional gel electrophoresis: IF-ESI LC-MS/MS.

Not available

S-EPMC5587868 | biostudies-literature

Enhanced LC-ESI-MS/MS Sensitivity by Cationic Derivatization of Organophosphorus Acids.

Not available

S-EPMC10459995 | biostudies-literature

Arabidopsis thaliana

Global triacylglycerol analysis in mouse liver and white adipose tissue (WAT) by high resolution LC/ESI-QTOF MS/MS

PRJDB14167 | ENA

LC-ESI-MS/MS Simultaneous Analysis Method Coupled with Cation-Exchange Solid-Phase Extraction for Determination of Pyrrolizidine Alkaloids on Five Kinds of Herbal Medicines.

Not available

S-EPMC8665765 | biostudies-literature

Untargeted LC-MS metabolomic studies of Asteraceae species to discover inhibitors of Leishmania major dihydroorotate dehydrogenase

INTRODUCTION: Interesting data about the family Asteraceae as a new source of Leishmania major dihydroorotate dehydrogenase (LmDHODH) inhibitors are presented. This key macromolecular target for parasites causing neglected diseases catalyzes the fourth reaction of the de novo pyr...

2019-10-14 | MTBLS722 | MetaboLights

Ghost Peaks of Aromatic Metabolites Induced by Corona Discharge Artifacts in LC-ESI-MS/MS.

Not available

S-EPMC11664113 | biostudies-literature

LC-ESI-QTOF-MS/MS Characterization of Seaweed Phenolics and Their Antioxidant Potential.

Not available

S-EPMC7344666 | biostudies-literature

Mitigating Matrix Effects in LC-ESI-MS-MS Analysis of a Urinary Biomarker of Xylenes Exposure.

Not available

S-EPMC10949524 | biostudies-literature

Determination of crenolanib in human serum and cerebrospinal fluid by liquid chromatography-electrospray ionization-tandem mass spectrometry (LC-ESI-MS/MS).

Not available