Lee Adam A - OmicsDI

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Transcriptomics (51)
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mixed sample (1)
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biostudies-arrayexpress (52)
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pride (4)
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Disease

Frontotemporal dementia (1)
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Technology Type

Mass Spectrometry (4)
Mass spectrometry (3)
Shotgun proteomics (3)
AB 5500 Genetic Analyzer, Ion Torrent PGM (1)
Illumina HiSeq 1000, Ion Torrent PGM, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2500 (1)
Life Tech - Solid (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (3)
G2565BA DNA microarray scanner [Agilent] (1)
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Illumina HiSeq 4000 (1)
Q Exactive HF-X (1)
Direct infusion MS - positive (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2005 (14)
2014 (8)
2006 (5)
2026 (4)
2012 (4)
2011 (4)
2024 (3)
2010 (3)
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2013 (2)
2008 (2)
2007 (2)
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2021 (2)
2015 (1)
2009 (1)
2023 (1)

CHEBI ID

CHEBI:132960 (1)
CHEBI:141312 (1)
CHEBI:190216 (1)
CHEBI:180468 (1)
CHEBI:72532 (1)
CHEBI:141311 (1)
CHEBI:137195 (1)
CHEBI:137899 (1)
CHEBI:178052 (1)
CHEBI:187785 (1)
CHEBI:142363 (1)
CHEBI:78128 (1)
CHEBI:78068 (1)
CHEBI:79007 (1)
CHEBI:78127 (1)
CHEBI:78069 (1)
CHEBI:78053 (1)
CHEBI:77016 (1)
CHEBI:78893 (1)
CHEBI:78072 (1)
CHEBI:62920 (1)
CHEBI:78125 (1)
CHEBI:78049 (1)
CHEBI:25626 (1)
CHEBI:36434 (1)
CHEBI:78124 (1)
CHEBI:137434 (1)
CHEBI:78123 (1)
CHEBI:78095 (1)
CHEBI:78122 (1)

Metabolite Name

BETA-NICOTINAMIDE ADENINE DINUCLEOTIDE (1)
URIDINE DIPHOSPHATE-N-ACETYLGLUCOSAMINE (1)
URIDINE DIPHOSPHATE GLUCURONIC ACID (1)
URIDINE DIPHOSPHATE GLUCOSE (1)
ADENOSINE DIPHOSPHATE RIBOSE (1)
ADENOSINE 5'-DIPHOSPHATE (1)
GUANOSINE MONOPHOSPHATE (1)
ADENOSINE-MONOPHOSPHATE (1)
URIDINE MONOPHOSPHATE (1)
THYMIDINE-MONOPHOSPHATE (1)
CYTIDINE 2',3'-CYCLIC PHOSPHATE (1)
6-PHOSPHOGLUCONATE (1)
GLUCOSE 1-PHOSPHATE (1)
FRUCTOSE 6-PHOSPHATE (1)
GLUCOSE 6-PHOSPHATE (1)
MELATONIN (1)
EPINEPHRINE (1)
METHIONINE SULFOXIMINE (1)
TRYPTAMINE (1)
HISTIDINE (1)
GLUTAMATE (1)
ASPARTATE (1)
TRANS-4-HYDROXY-L-PROLINE (1)
CYCLIC AMP (1)
5-HYDROXYTRYPTOPHAN (1)
S-ADENOSYLHOMOCYSTEINE (1)
CAFFEINE (1)
THEOPHYLLINE (1)
ANSERINE (1)
CITICOLINE (1)

First Public Date

2014 (1)

Study type

Transcription profiling by array (32)
RNA-seq of coding RNA (5)
ChIP-chip by array (3)
Comparative genomic hybridization by array (3)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
Spatial transcriptomics by high-throughput sequencing (1)
Other (1)
Single nucleus RNA sequencing (1)
ChIP-seq (1)
MicroRNA profiling by array (1)
Genotyping by high throughput sequencing (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2023 (45)
2022 (41)
2021 (35)
2024 (31)
2025 (23)
2020 (16)
2014 (14)
2005 (14)
2019 (14)
2015 (12)
2026 (10)
2018 (9)
2017 (9)
2012 (8)
2010 (8)
2013 (6)
2011 (5)
2006 (5)
2016 (4)
2009 (2)
2008 (2)
2007 (2)
2002 (1)

Lab affiliation

Department of Pathology Cancer Center Stony Brook University (1)
Neurodegeneration Pathobiology Laboratory, Queensland Brain Institute, The University of Queensland, Brisbane, QLD, Australia (1)
Dept. Microbiology & Immunology The University of Texas Medical Branch at Galveston (1)
University of Edinburgh (1)

Tags

xref:PubMed:17679090 (1)

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MetaboKit: a comprehensive data extraction tool for untargeted metabolomics (Mouse liver assays)

We have developed MetaboKit, a comprehensive software package for compound identification and relative quantification in mass spectrometry-based untargeted metabolomics analysis. In data dependent acquisition (DDA) analysis, MetaboKit constructs a customized spectral library with compound identit...

2021-11-02 | MTBLS1266 | MetaboLights

Polymeric ADAM protein mimics interrogate mammalian sperm-egg binding.

Not available

S-EPMC2742739 | biostudies-literature

MetaboKit: a comprehensive data extraction tool for untargeted metabolomics (Standard mixture assay)

2021-11-05 | MTBLS1311 | MetaboLights

Potential impact of ADAM-10 genetic variants with the clinical features of oral squamous cell carcinoma.

Not available

S-EPMC10098292 | biostudies-literature

Metalloendopeptidase ADAM-like Decysin 1 (ADAMDEC1) in Colonic Subepithelial PDGFRα⁺ Cells Is a New Marker for Inflammatory Bowel Disease.

Not available

S-EPMC9103908 | biostudies-literature

Biomarkers on melanoma patient T cells associated with ipilimumab treatment.

Not available

S-EPMC3527361 | biostudies-literature

Comparison of gene expression in spo0J mutant and wild-type B. subtilis

We investigated the genome-wide DNA binding of the chromosome partitioning and sporulation protein and ParB family member Spo0J in Bacillus subtilis using chromatin immunoprecipitation and DNA microarrays. We identified ten parS loci to which Spo0J binds, two of which were unexpectedly distant (>1 ...

ORGANISM(S): Bacillus subtilis

2010-06-11 | E-GEOD-6598 | biostudies-arrayexpress

Tempo-Seq experiment relating to Next Generation Risk Assessment for Occupational Chemical Safety – a Real World Example with Sodium-2-hydroxyethane sulfonate

A dose response and human cell line comparison of transcriptional responses following treatment with the chemical compound Sodium-2-hydroxyethane sulfonate. Gene expression changes were used to estimate the POD - minimum effect concentration when a biological perturbation as estimated by gene exp...

ORGANISM(S): Homo sapiens

2024-12-31 | E-MTAB-14069 | biostudies-arrayexpress

Modeling The Economic And Health Impact Of Increasing Children's Physical Activity In The United States.

Not available

S-EPMC5563819 | biostudies-literature

Noninvasive Assessment of Epidermal Genomic Markers of UV Exposure in Skin.

Not available

S-EPMC7736225 | biostudies-literature