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TranscriptomicsGene expression level during L-threonine production
The comparative transcriptome profiling of L-threonine producing strain (TH07 strain harboring pBRThrABC) and control W3110 (lacI-deleted) strain harboring pKK223-3 has been analyzed using oligo nucleotide microarray. Keywords: comparative transcriptome analysis (between L-threonine producing strai...
ORGANISM(S): Escherichia coli 
2010-05-25 | E-GEOD-9434 | biostudies-arrayexpress
ModelsLee2008 - Genome-scale metabolic network of Clostridium acetobutylicum (iJL432)
Lee2008 - Genome-scale metabolic network of Clostridium acetobutylicum (iJL432) This model is described in the article: Genome-scale reconstruction and in silico analysis of the Clostridium acetobutylicum ATCC 824 metabolic network. Lee J, Yun H, Feist AM, Palsson BØ, Lee SY...
2015-07-30 | MODEL1507180030 | BioModels
TranscriptomicsEffect pck or ppc expression on intracellular ATP
Up-regulation of motility genes and biosynthesis genes were found in the pck expressing high ATP cell by transcriptome analysis while catabolism genes were down-regulated. Keywords: response depends on intracellular ATP concentration derived by pck or ppc overexpression 1. pck or ppc overexpressing ...
ORGANISM(S): Escherichia coli 
2010-06-09 | E-GEOD-8532 | biostudies-arrayexpress
ModelsLee2010 - Genome-scale metabolic network of Zymomonas mobilis (iZmobMBEL601)
Lee2010 - Genome-scale metabolic network of Zymomonas mobilis (iZmobMBEL601) This model is described in the article: The genome-scale metabolic network analysis of Zymomonas mobilis ZM4 explains physiological features and suggests ethanol and succinic acid production strategies...
2015-07-30 | MODEL1507180031 | BioModels
ModelsSohn2012 - Genome-scale metabolic network of Schizosaccharomyces pombe (SpoMBEL1693)
Sohn2012 - Genome-scale metabolic network of Schizosaccharomyces pombe (SpoMBEL1693) This model is described in the article: Genome-scale metabolic model of the fission yeast Schizosaccharomyces pombe and the reconciliation of in silico/in vivo mutant growth. Sohn SB, Kim TY, ...
2015-07-30 | MODEL1507180061 | BioModels
ModelsSohn2010 - Genome-scale metabolic network of Pseudomonas putida (PpuMBEL1071)
Sohn2010 - Genome-scale metabolic network of Pseudomonas putida (PpuMBEL1071) This model is described in the article: In silico genome-scale metabolic analysis of Pseudomonas putida KT2440 for polyhydroxyalkanoate synthesis, degradation of aromatics and anaerobic survival. ...
2015-07-30 | MODEL1507180043 | BioModels
ModelsKim2009 - Genome-scale metabolic network of Acinetobacter baumannii (AbyMBEL891)
Kim2009 - Genome-scale metabolic network of Acinetobacter baumannii (AbyMBEL891) This model is described in the article: Genome-scale metabolic network analysis and drug targeting of multi-drug resistant pathogen Acinetobacter baumannii AYE. Kim HU, Kim TY, Lee SY. Mol Biosy...
2015-07-30 | MODEL1507180029 | BioModels
ModelsSohn2010 - Genome-scale metabolic network of Pichia pastoris (PpaMBEL1254)
Sohn2010 - Genome-scale metabolic network of Pichia pastoris (PpaMBEL1254) This model is described in the article: Genome-scale metabolic model of methylotrophic yeast Pichia pastoris and its use for in silico analysis of heterologous protein production. Sohn SB, Graf AB, Kim ...
2015-07-30 | MODEL1507180050 | BioModels
ModelsKim2007 - Genome-scale metabolic network of Mannheimia succiniciproducens (iTY425)
Kim2007 - Genome-scale metabolic network of Mannheimia succiniciproducens (iTY425) This model is described in the article: Genome-scale analysis of Mannheimia succiniciproducens metabolism. Kim TY, Kim HU, Park JM, Song H, Kim JS, Lee SY. Biotechnol. Bioeng. 2007 Jul; 97(4): ...
2015-07-30 | MODEL1507180062 | BioModels
ModelsHong2004 - Genome-scale metabolic network of Mannheimia succiniciproducens (iSH335)
Hong2004 - Genome-scale metabolic network of Mannheimia succiniciproducens (iSH335) This model is described in the article: The genome sequence of the capnophilic rumen bacterium Mannheimia succiniciproducens. Hong SH, Kim JS, Lee SY, In YH, Choi SS, Rih JK, Kim CH, Jeong H, Hur...
2015-07-30 | MODEL1507180025 | BioModels
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