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TranscriptomicsSingle cell RNA-seq of Stmn1+ isthmal cells and Pgc+ chief cells to compare and characterize distinct gastric corpus stem cells at molecular level
The purpose of this single cell experiment is to compare and characterize at molecular level actively cycling stem cells in the isthmus and quiescent stem cells in the base of the mouse stomach corpus. The lineage tracing data from Stmn1-CreERT2 shows that Stmn1+ cells in the corpus isthmus include ...
ORGANISM(S): Mus musculus 
2019-08-14 | E-MTAB-6879 | biostudies-arrayexpress
TranscriptomicsSingle-cell RNA-seq of intestinal crypts of Red2Kras and Red2Pi3k mice
We isolated mutant and wild-type epithelial cells as well as mesenchymal and immune cells from Confetti, R2Kras and R2Pi3k lines at 2 weeks post-induction and generated single-cell RNA-seq data from them.
ORGANISM(S): Mus musculus 
2021-04-04 | E-MTAB-8656 | biostudies-arrayexpress
TranscriptomicsBulk RNA-seq of proliferating cells in the mouse stomach corpus epithelium from FUCCI mouse.
The purpose of this bulk RNA-seq experiment is to identify candidate genes that can mark proliferating isthmus progenitors in the mouse stomach corpus epithelium. The cycling isthmus progenitors were isolated based on mVenus expression in FUCCI mouse and used for bulk RNA-seq data generation. The co...
ORGANISM(S): Mus musculus 
2019-08-14 | E-MTAB-6850 | biostudies-arrayexpress
ProteomicsChemoproteomic identification of a phosphohistidine acceptor: Insights into posttranslational regulation of glycolysis
Histidine phosphorylation is an underexplored form of protein phosphorylation. Despite the widespread existence of phosphohistidine (pHis) sites, particularly in bacteria, their phosphorylation regulation and physiological functions remain poorly understood. In this study, we developed a chemoproteo...
ORGANISM(S): Escherichia coli 
2025-05-07 | PXD056526 | Pride
Cell lysate E.coli Qexactive Lc-ms/ms 
ProteomicsChemoproteomic identification of a phosphohistidine acceptor: Insights into posttranslational regulation of glycolysis
Histidine phosphorylation is an underexplored form of protein phosphorylation. Despite the widespread existence of phosphohistidine (pHis) sites, particularly in bacteria, their phosphorylation regulation and physiological functions remain poorly understood. In this study, we developed a chemoproteo...
ORGANISM(S): Escherichia coli 
2025-05-07 | PXD053006 | Pride
Cell lysate E.coli Qexactive Lc-ms/ms 
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