Lei Yu Y - OmicsDI

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Unknown (1014)
Proteomics (80)
Metabolomics (16)
Genomics (8)
Transcriptomics (7)
Models (2)
Multiomics (1)

Organisms

Homo sapiens (51)
Mus musculus (22)
Macaca fascicularis fascicularis (3)
Oryza sativa (3)
cellular organisms (2)
Rattus norvegicus (2)
Arabidopsis thaliana (2)
Mycolicibacterium smegmatis MC2 155 (2)
Rattus rattus (2)
Brassica oleracea var. botrytis (2)
Drosophila melanogaster (2)
Clonorchis sinensis (1)
Bos taurus (1)
Oryctolagus cuniculus (1)
Spinacia oleracea (1)
Spodoptera frugiperda (1)
Staphylococcus aureus (1)
Bombyx mori (1)
Elymus sibiricus (1)
Morus alba (1)
Morus alba var. macroura (1)

Repository

iProX (50)
pride (27)
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biostudies-arrayexpress (9)
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Tissue

Cell culture (9)
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Others (1)
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Seed (1)
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Disease

Cervix carcinoma (1)
Gastric adenocarcinoma (1)
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Lung cancer (1)
Prostate adenocarcinoma (1)

Technology Type

Mass Spectrometry (27)
Mass spectrometry (15)
Shotgun proteomics (7)
Bottom-up proteomics (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Proteogenomics (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-dependent acquisition (2)
Data-independent acquisition (2)
Gel-based experiment (2)
Illumina HiSeq 2000 (1)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)
Mass spectrometry assay (1)
Mass spectrometry imaging (1)
RNA mass spectrometry (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (9)
Liquid Chromatography MS - negative - reverse phase (8)
6540 Q-TOF LC/MS (Agilent) (2)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Illumina HiSeq 2500 (1)
LTQ Orbitrap Elite (1)
Velos Plus (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - alternating – hilic (1)
LTQ FT (1)

Publication Date

2025 (19)
2022 (16)
2024 (15)
2023 (15)
2021 (14)
2020 (6)
2026 (6)
2014 (3)
2013 (2)
2012 (2)
2019 (2)
2018 (2)
2016 (2)
2005 (1)
2017 (1)
2007 (1)

UNIPROT ID/AC

O14543 (2)
O15524 (2)
O60674 (2)
P01112 (2)
P01579 (2)
P04049 (2)
P05231 (2)
P08887 (2)
P15260 (2)
P17676 (2)
P23458 (2)
P28482 (2)
P40189 (2)
P40763 (2)
P42224 (2)
P62136 (2)
P62993 (2)
P67775 (2)
Q02750 (2)
Q06124 (2)
Q07889 (2)
A0A024R563 (1)
A0A087WTX5 (1)
A0A087WYL9 (1)
A0A087X130 (1)
A0A087X1V9 (1)
A0A0A0MS07 (1)
A0A0A0MSA7 (1)
A0M8Q6 (1)
A0MZ66 (1)

ENSEMBL ID

ENSG00000170477 (1)

CHEBI ID

CHEBI:17596 (7)
CHEBI:15756 (6)
CHEBI:16335 (6)
CHEBI:16359 (6)
CHEBI:16704 (6)
CHEBI:16919 (6)
CHEBI:17126 (6)
CHEBI:17351 (6)
CHEBI:17368 (6)
CHEBI:17509 (6)
CHEBI:30769 (6)
CHEBI:15354 (5)
CHEBI:15611 (5)
CHEBI:15727 (5)
CHEBI:15741 (5)
CHEBI:16040 (5)
CHEBI:16196 (5)
CHEBI:16450 (5)
CHEBI:16737 (5)
CHEBI:16750 (5)
CHEBI:17191 (5)
CHEBI:17361 (5)
CHEBI:17568 (5)
CHEBI:17650 (5)
CHEBI:18050 (5)
CHEBI:18089 (5)
CHEBI:26271 (5)
CHEBI:27432 (5)
CHEBI:28716 (5)
CHEBI:32816 (5)

Metabolite Name

Creatine (4)
Inosine (4)
Proline (4)
Adenosine (3)
Asparagine (3)
Azelaic acid (3)
Benzyl alcohol (3)
Hypoxanthine (3)
Indole (3)
Isoleucine (3)
L-glutamic acid (3)
L-glutamine (3)
Leucine (3)
Melatonin (3)
Pipecolic acid (3)
Tryptophan (3)
Tyrosine (3)
Valine (3)
(-)-3-Cyanomethyl-3-hydroxy-1H-indol-2(3H)-one (2)
1-Tetradecene (2)
1-methyladenosine (2)
2'-deoxycytidine (2)
3,4-Dihydroxyphenylglycol (2)
3-methoxytyramine (2)
4-Hydroxybenzoic acid (2)
5'-Methylthioadenosine (2)
5'-S-methyl-5'-thioadenosine (2)
5'-deoxyadenosine (2)
Acetic acid (2)
Arachidonic acid (2)

IsPrivate

False (2)

Modelling Approach

Ordinary differential equation model (2)

Study type

Transcription profiling by array (3)
Methylation profiling by high throughput sequencing (2)
RNA-seq of coding RNA (2)
Transcription profiling by SAGE (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (182)
2022 (152)
2024 (142)
2023 (117)
2021 (107)
2020 (67)
2018 (54)
2019 (45)
2016 (30)
2026 (29)
2017 (28)
2015 (23)
2014 (16)
2012 (12)
2013 (6)
2005 (6)
2010 (3)
2011 (2)
2009 (1)
2002 (1)

Lab affiliation

Peking University (3)
Yazhouwan National Laboratory, Sanya 572024, China (3)
Nuclear Organization and Gene Expression Section, Laboratory of Biochemistry and Genetics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland, USA (2)
State Key Laboratory for Innovation and Transformation of Luobing Theory; Key Laboratory of Cardiovascular Remodeling and Function Research, Chinese Ministry of Education, Chinese National Health Commission and Chinese Academy of Medical Sciences; Department of Cardiology, Qilu Hospital of Shandong University, Jinan, China (2)
westlake.edu.cn (2)
2Proteome Exploration Laboratory, Beckman Institute, California Institute of Technology, Pasadena, CA 91125 (1)
Department of Applied Biology and Chemical Technology,The Hong Kong Polytechnic University (1)
Department of Hepatology, Tianjin Medical University General Hospital, Tianjin, China (1)
Department of Neurosurgery, Nanfang hospital, Southern Medical University, Guangzhou 510515,China (1)
Department of Pathophysiology, School of Basic Medicine, Key Laboratory of Ministry of Education of China for Neurological Disorders, Tongji Medical College, Huazhong University of Science and Technology (1)
Guangzhou Medical University (1)
Huazhong University of Science and Technology (1)
Huazhong University of Science and Technology, China (1)
Key laboratory of Plant Molecular Physiology, CAS Center for Excellence in Molecular Plant Sciences, Institute of Botany, Chinese Academy of Sciences, Beijing, 10093, People’s Republic of China (1)
National Key Laboratory of Medical Immunology & Institute of Immunology, Second Military Medical University (1)
National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China (1)
Sichuan Agricultural University (1)
State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Animal Science and Technology, Guangxi University, Nanning, P.R. China (1)
Tsinghua university, Department of chemistry (1)
Zhejiang Sci-Tech University, College of Life Science, (1)

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The ratio of dihomo-γ-linolenic acid to deoxycholic acid species is a potential biomarker for the metabolic abnormalities in obesity.

Not available

S-EPMC6191069 | biostudies-literature

Methylenetetrahydrofolate reductase C677T and A1298C polymorphisms and gastric cancer susceptibility.

Not available

S-EPMC4145786 | biostudies-literature

Analysis of allohexaploid wheatgrass genome reveals its Y haplome origin in Triticeae and high-altitude adaptation.

Not available

S-EPMC11958778 | biostudies-literature

Tet and TDG Mediate DNA Demethylation Essential for MET in Somatic Cell Reprogramming

Tet-mediated DNA oxidation is a new type of epigenetic modification in mammals and its role in the regulation of cell fate transition remains poorly understood. Here, we derive mouse embryonic fibroblasts (MEFs) deleted in all three Tet genes and examine their capability to be reprogrammed into iPS ...

ORGANISM(S): Mus musculus

2014-02-19 | E-GEOD-52741 | biostudies-arrayexpress

Human visual attention-inspired knowledge distillation underlying interpretable computational pathology.

Not available

S-EPMC12658170 | biostudies-literature

Comparative physiological and proteomic analysis reveals different involvement of proteins during artificial aging of Siberian wildrye (Elymus sibiricus L.) seeds

In total, 5134 protein groups were identified, among which 4169 proteins were quantified. The fold-change cutoff was set when proteins with quantitative ratios above 1.3 or below 1/1.3 and P value<0.05 are deemed significant. Among the quantified proteins, 70 proteins are up-regulated and 104 protei...

ORGANISM(S): Elymus sibiricus

2021-09-09 | PXD021552 | Pride

Research trends of nanomaterials in <i>Helicobacter pylori</i>: a bibliometric analysis from 2003 to 2023.

Not available

S-EPMC11986359 | biostudies-literature

Nucleotidyltransferase gene HESO1

Small RNAs in plants are protected by 2'-O-methylation at 3' terminal nucleotide by HEN1. In hen1 mutant, small RNAs lacking 3' methylation are truncated and tailed at 3' end. We identified a nucleotidyltransferase gene HESO1 in Arabidopsis that tails small RNAs in hen1. In order to study the small ...

ORGANISM(S): Arabidopsis thaliana

2012-06-30 | E-GEOD-35479 | biostudies-arrayexpress

Greater variability in lipid measurements associated with kidney diseases in patients with type 2 diabetes mellitus in a 10-year diabetes cohort study.

Not available

S-EPMC8044222 | biostudies-literature

Evaluating the effect of an artificial intelligence system on the anesthesia quality control during gastrointestinal endoscopy with sedation: a randomized controlled trial.

Not available

S-EPMC9540709 | biostudies-literature

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