Li Chan C - OmicsDI

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Unknown (2529)
Transcriptomics (77)
Proteomics (72)
Genomics (53)
Metabolomics (8)
Genomic (2)
Models (1)
Multiomics (1)

Organisms

Homo sapiens (133)
Mus musculus (36)
Toxoplasma gondii RH (5)
Rattus norvegicus (3)
Saccharomyces cerevisiae (2)
Glycine max (2)
Arabidopsis thaliana (2)
Ancylostoma ceylanicum (2)
cellular organisms (1)
Schizosaccharomyces pombe (1)
Francisella tularensis (1)
Oryza sativa Japonica Group (1)
Plasmodium falciparum (1)
Pseudomonas aeruginosa (1)
Triticum aestivum (1)
Bos taurus (1)
Agrobacterium tumefaciens (1)
Deinagkistrodon acutus (1)
Eriocheir sinensis (1)
Meyerozyma guilliermondii (1)
Oryza sativa (1)

Repository

biostudies-arrayexpress (85)
pride (54)
EGA (48)
MassIVE (10)
MetaboLights (8)
iProX (5)
dbGaP (2)
jPOST (2)
BioModels (1)

Tissue

Cell culture (8)
Epithelial cell (5)
Brain (3)
Hepatocyte (2)
Liver (2)
Mammary gland (2)
Plant cell (2)
Adipose tissue (1)
Artery (1)
Blood cell (1)
Blood plasma (1)
Blood serum (1)
Bone marrow (1)
Breast (1)
Brown fat cell (1)
Cell suspension culture (1)
Colon (1)
Conjunctiva (1)
Embryo (1)
Esophagus (1)
Heart (1)
Intervertebral disc (1)
Kidney (1)
Lung (1)
Mesenchymal cell (1)
Multipotent stem cell (1)
Natural killer cell (1)
Nucleus pulposus cell of intervertebral disc (1)
Ovarian surface epithelial cell (1)
T cell (1)

Disease

Breast cancer (4)
Acute myeloid leukemia (2)
Type 2 diabetes mellitus (2)
Bacterial infectious disease (1)
Normal (1)
Acute leukemia (1)
Cell type cancer (1)
Diabetes mellitus (1)
Disease free (1)
Dry eye syndrome (1)
Immune system disease (1)
Kidney disease (1)
Malignant neoplasm of ovary (1)
Metabolic dysfunction-associated steatotic liver disease (1)
Obesity (1)
Scoliosis (1)
Severe acute respiratory syndrome (1)

Technology Type

Mass Spectrometry (54)
Shotgun proteomics (26)
Bottom-up proteomics (19)
Data-dependent acquisition (7)
Mass spectrometry (6)
SWATH MS (3)
Mass spectrometry assay (2)
Gel-based experiment (2)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2500, ILLUMINA (1)
Illumina_Infinium_HumanMethylation450, Illumina_HumanHT-12v4 (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (4)
Liquid Chromatography MS - positive - reverse phase (4)
Illumina NovaSeq 6000 (3)
LTQ Orbitrap Elite (3)
LTQ Orbitrap Velos (3)
Q Exactive (3)
Illumina HiSeq 2000 (2)
LTQ Orbitrap XL (2)
Orbitrap Fusion Lumos (2)
6540 Q-TOF LC/MS (Agilent) (2)
HiSeq X Ten (1)
LTQ Velos (1)
Orbitrap Ascend (1)
Orbitrap Astral (1)
Orbitrap Eclipse (1)
Orbitrap Fusion (1)
Q Exactive HF-X (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - positive - hilic (1)
TripleTOF 5600 (AB Sciex) (1)
Applied biosystems / mds sciex 4700 proteomics analyzer (1)
Applied biosystems / mds sciex q trap (1)
Applied biosystems / mds sciex qstar (1)
Thermo lcq deca (1)
Thermo lcq deca xp (1)
Thermo ltq (1)
UNKNOWN UNKNOWN (1)
Waters q-tof (1)

Publication Date

2022 (14)
2023 (14)
2015 (13)
2013 (13)
2012 (13)
2025 (13)
2010 (11)
2026 (10)
2019 (9)
2024 (8)
2011 (8)
2007 (5)
2018 (5)
2016 (4)
2014 (4)
2009 (4)
2008 (4)
2020 (4)
2021 (3)
2017 (2)
2006 (2)
2005 (2)

UNIPROT ID/AC

P06239 (1)
P29350 (1)

CHEBI ID

CHEBI:17154 (3)
CHEBI:7916 (3)
CHEBI:131739 (2)
CHEBI:131740 (2)
CHEBI:131743 (2)
CHEBI:131777 (2)
CHEBI:15728 (2)
CHEBI:15756 (2)
CHEBI:16040 (2)
CHEBI:16196 (2)
CHEBI:16335 (2)
CHEBI:16610 (2)
CHEBI:16704 (2)
CHEBI:16750 (2)
CHEBI:16811 (2)
CHEBI:16870 (2)
CHEBI:17015 (2)
CHEBI:17126 (2)
CHEBI:17351 (2)
CHEBI:17509 (2)
CHEBI:17521 (2)
CHEBI:17533 (2)
CHEBI:17596 (2)
CHEBI:17620 (2)
CHEBI:17750 (2)
CHEBI:18123 (2)
CHEBI:18132 (2)
CHEBI:18186 (2)
CHEBI:18237 (2)
CHEBI:18344 (2)

Metabolite Name

Adenosine (2)
Glucosamine (2)
Glutamine (2)
Guanosine (2)
Methionine (2)
Pantothenic acid (2)
Phytocassane B (2)
Spermidine (2)
Succinyladenosine (2)
Tyrosine (2)
(+)-Gallocatechin (1)
(+)-Setoclavine (1)
(+/-)-(Z)-2-(5-Tetradecenyl)cyclobutanone (1)
(+/-)-2-Pentylthiazolidine (1)
(+/-)-Fenarimol (1)
(+/-)-Metalaxyl (1)
(+/-)-Naled (1)
(+/-)-Ribaline (1)
(+/-)-threo-Anethole glycol (1)
(-)-4(10)-Thujene (1)
(-)-Aspidospermine (1)
(-)-erythro-Anethole glycol 1-glucoside (1)
(-)-trans-Carveol glucoside (1)
(1R,2R,4S)-p-Menthane-1,2,8-triol 8-glucoside (1)
(2E,4E,6Z)-2,4,6-Decatrienoic acid dehydropiperidide (1)
(2R*,3R*)-1,2,3-Butanetriol (1)
(2S,4S)-Monatin (1)
(3S,5R,6R,6'S)-6,7-Didehydro-5,6-dihydro-3,5,6'-trihydroxy-13,14,20-trinor-3'-oxo-beta,epsilon-caroten-19',11'-olide 3-acetate (1)
(3a,5b)-24-oxo-24-[(2-sulfoethyl)amino]cholan-3-yl-b-D-Glucopyranosiduronic acid (1)
(3alphaOH,20S,24S)-3,19:20,24-Diepoxydammarane-3,25-diol (1)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Modification

N6 (2)
N6-dimethyl-L-lysine (2)
Not available (1)

Study type

Transcription profiling by array (52)
RNA-seq of coding RNA (7)
Unknown experiment type (4)
Methylation profiling by array (4)
ChIP-chip by tiling array (3)
ChIP-seq (2)
DNA-seq (2)
Genotyping by array (1)
Spatial transcriptomics by high-throughput sequencing (1)
Comparative genomic hybridization by array (1)
Single nucleus RNA sequencing (1)
MicroRNA profiling by array (1)
Proteomic profiling by array (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (316)
2025 (308)
2023 (306)
2021 (295)
2024 (278)
2020 (235)
2018 (150)
2019 (142)
2017 (108)
2016 (93)
2015 (80)
2013 (51)
2026 (50)
2014 (46)
2012 (39)
2010 (30)
2011 (29)
2007 (17)
2009 (15)
2008 (15)
2006 (4)
2005 (3)
2004 (2)
2002 (1)
2001 (1)

Lab affiliation

Associate Professor, Department of Biology, Massachusetts Institute of Technology and Whitehead Institute for Biomedical Research (2)
Faculty of Health Sciences, University of Macau, Macau, China (2)
Harvard medical school (2)
Program in Molecular Medicine, University of Massachusetts Chan Medical School, Worcester, MA, 01605-2377, USA (2)
The Chinese University of Hong Kong (2)
Assistant Professor, Dept of Obstetrics & Gynaecology, Faculty of Medicine, The Ubiversity of Hong Kong (1)
Associate Professor, Department of Biology, Massachusetts Institute of Technology (1)
Associate Professor, Department of Biology, Massachusetts Institute of Technology and Whitehead Institute of Biomedical Research (1)
Associate Professor, Department of Biology, Massachusetts Institute of Technology and the Whitehead Institute for Biomedical Research (1)
Baylor College of Medicine (1)
Biprocessing Technology Institute (BTI), Agency for ScieNce, Technology and Research (A*STAR) (1)
College of life science, Shaoxing University, Shaoxing,China (1)
Department of Applied Biology and Chemical Technology, Hong Kong Polytechnic University, Hung Hom, Hong Kong S.A.R., China (1)
Department of Biochemistry, Albert Einstein College of Medicine (1)
Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, Guangdong, China (1)
Department of Biology, University of Ottawa, Ottawa, Canada, K1N 6N5 (1)
Department of Cardiovascular & Metabolic Sciences, Cleveland Clinic Foundation, USA (1)
Department of Chemistry, University of Toronto, 80 St. George Street, Toronto, ON, M5S 3H6, Canada Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, 160 College Street, Toronto, ON, M5S 3E1, Canada Institute of Biomedical Engineering, University of Toronto, 164 College Street, Toronto, ON, M5S 3G9, Canada. (1)
Department of Genetics, Stanford University (1)
Department of Health Technology & Informatics (HTI), The Hong Kong Polytechnic University (PolyU) (1)
Department of Medicine, Division of Nephrology, Icahn School of Medicine at Mount Sinai, New York, NY, USA. (1)
Department of Pediatrics Indiana University School of Medicine Riley Hospital for Children (1)
Department of Translational Hematology and Oncology Research, Taussig Cancer Institute, Cleveland Clinic; Cleveland, OH. (1)
Department of cell biology, Harvard Medical School (1)
Division of Haematology, Department of Medicine, LKS Faculty of Medicine, The University of Hong Kong, Pokfulam, Hong Kong SAR, China. (1)
Division of Metabolism, Endocriology & Diabetes and Department of Internal Medicine, University of Michigan, Ann Arbor, MI, 48105, USA (1)
Early Detection and Prevention, Translational Genomics Research Institute, Phoenix, AZ  Integrated Mass Spectrometry Shared Resource, City of Hope Comprehensive Cancer Center, Duarte, CA  (lab head) (1)
Functional Proteomics, ICR (1)
Harvard School of Public Health (1)
Ichan School of Medicine at Mount Sinai (1)

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Neural Pattern of Chanting-Driven Intuitive Inquiry Meditation in Expert Chan Practitioners.

Not available

S-EPMC12466501 | biostudies-literature

Chan-Chuang and resistance exercise for drug rehabilitation: a randomized controlled trial among Chinese male methamphetamine users.

Not available

S-EPMC10642185 | biostudies-literature

Differential role of sphingomyelin in influenza virus, rhinovirus and SARS-CoV-2 infection of Calu-3 cells

Host cell lipids play a pivotal role in the pathogenesis of respiratory virus infection. However, a direct comparison of the lipidomic profile of influenza virus and rhinovirus infections is lacking. In this study, we first compared the lipid profile of influenza virus and rhinovirus infection in a ...

2022-11-15 | MTBLS2352 | MetaboLights

Extending the coverage of Lys-C/trypsin-based bottom-up proteomics using cysteine S-aminoethylation

In this study, S-aminoethylation of Cys (AE-Cys) was carried out with 2-bromoethylamine to form pseudo-Lys, which was then digested with Lys-C or trypsin to improve proteome coverage in bottom-up proteomics. A model study with bovine serum albumin showed that the C-terminal side of Cys was successfu...

ORGANISM(S): Homo Sapiens (human) Bos Taurus

2023-09-27 | PXD045433 | JPOST Repository

Thrombopoietin (TPO) protects against heart damage induced by doxorubicin and infarction in rat models

In order to examine the mechanism of TPO on cardiac protection against DOX damage, we have employed whole genome microarray expression profiling as a discovery platform to identify genes with the potential to delineate the TPO cardioprotective mechanism against DOX-induced cardiomyopathy Dox and TPO...

ORGANISM(S): Rattus norvegicus

2010-12-29 | E-GEOD-15449 | biostudies-arrayexpress

A Review of the Beetle Genus <i>Corticarina</i> of Taiwan, with Description of a New Species (Coleoptera, Latridiidae).

Not available

S-EPMC11659816 | biostudies-literature

Genetic and stochastic influences upon tumor formation and tumor types in Li-Fraumeni mouse models.

Not available

S-EPMC7772779 | biostudies-literature

The complete mitogenome of the blackgill catshark, Parmaturus melanobranchus (Chan, 1966).

Not available

S-EPMC8284142 | biostudies-literature

Methionine oxidized apolipoprotein A-I at the crossroads of HDL biogenesis and amyloid formation.