Li Hongyu H - OmicsDI

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Proteomics (9)
Unknown (5)
Transcriptomics (3)
Metabolomics (1)

Organisms

Homo sapiens (5)
Mus musculus (3)
Bombyx mori (1)
Saccharomyces cerevisiae (1)
Rattus norvegicus (1)
Acyrthosiphon pisum (1)
Mycobacterium tuberculosis OFXR-32 (1)

Repository

iProX (7)
biostudies-arrayexpress (3)
pride (2)
MetaboLights (1)

Tissue

Root (1)

Technology Type

Mass Spectrometry (2)
Mass spectrometry (1)
Data-dependent acquisition (1)
Shotgun proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2024 (4)
2023 (2)
2022 (2)
2016 (1)
2014 (1)
2010 (1)
2026 (1)
2025 (1)

Metabolite Name

((2R,3S,4S,5R,6S)-6-(2-(3-(Benzofuran-5-yl)propanoyl)-3-hydroxy-5-methylphenoxy)-3,4,5-trihydroxytetrahydro-2H-pyran-2-yl)methyl methyl carbonate (1)
(+)-15,16-Dihydroxyoctadecanoic acid (1)
(+)-3,4-Didehydrocoronaridine (1)
(+)-7-epi-Syringaresinol 4'-glucoside (1)
(+)-Abscisic acid (1)
(+)-Bottrospicatol (1)
(+)-cis-3,4-Dihydrophenanthrene-3,4-diol (1)
(-)-Epigallocatechin 3-p-coumaroate (1)
(-)-Fumigaclavine B (1)
(-)-Jasmonic acid (1)
(-)-Menthol (1)
(-)-alpha-5,9-Dimethyl-2-(3-furylmethyl)-2'-hydroxy-6,7-benzomorphane (1)
(-)-jasmonoyl-L-isoleucine (1)
(-)-trans-3,4-Dihydro-4,8-dihydroxy-3-methyl-1H-2-benzopyran-1-one (1)
(10S)-Juvenile hormone III diol (1)
(10Z,14E,16E)-10,14,16-Octadecatrien-12-ynoic acid (1)
(14alpha,17beta,20S,22R)-14,20-Epoxy-17-hydroxy-1-oxowitha-3,5,24-trienolide (1)
(16-Benzyl-5,12-dihydroxy-5,7,14-trimethyl-13-methylidene-6,18-dioxo-17-azatricyclo[9.7.0.01,15]octadeca-3,9-dien-2-yl) acetate (1)
(17E,19E,21E,23E,25E)-4,6,8,10,12,14,16,27-Octahydroxy-3-(1-hydroxyhexyl)-17,28-dimethyl-1-oxacyclooctacosa-17,19,21,23,25-pentaen-2-one (1)
(17R)-17-Ethynyl-11-methoxy-13-methyl-7,8,9,11,12,14,15,16-octahydro-6H-cyclopenta[a]phenanthrene-3,17-diol (1)
(1Ar,3S,4aS,7S,8aS)-3-[(1S,2R,3R)-3-[(2R,5S)-5,6-dimethylheptan-2-yl]-2-(2-hydroxyethyl)-2-methylcyclopentyl]-7-hydroxy-4a-methyl-2,3,5,6,7,8-hexahydro-1aH-naphtho[4,4a-b]oxiren-4-one (1)
(1E)-4-Oxobut-1-ene-1,2,4-tricarboxylate (1)
(1E,4S,5E,7R)-Germacra-1(10),5-dien-11-ol (1)
(1E,4Z,6a,8b,10a)-8-Angeloyloxy-10,15-dihydroxy-3-oxo-1,4,11(13)-germacratrien-12,6-olide (1)
(1R)-5-[2-[(1S,7As)-1-[(1S)-1-(3-hydroxy-3-methylbutoxy)ethyl]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-4-methylidenecyclohexane-1,3-diol (1)
(1R,2R)-2-Amino-1-(4-nitrophenyl)propane-1,3-diol (1)
(1R,2S,3S,4R)-p-Menthane-2,3-diol (1)
(1R,2S,5S,6R,9S,10S)-3,6,17,20-Tetrahydroxy-6-(2-hydroxyacetyl)-1,5-dimethylpentacyclo[11.8.0.02,10.05,9.016,21]henicosa-13,16,18,20-tetraen-15-one (1)
(1R,3R,4R,5S,6S,8x)-1-Acetoxy-8-angeloyloxy-3,4-epoxy-5-hydroxy-7(14),10-bisaboladien-2-one (1)
(1R,6R)-1,4,5,5a,6,9-Hexahydrophenazine-1,6-dicarboxylate (1)

Study type

RNA-seq of coding RNA (2)
Transcription profiling by array (1)

Release Date

2025 (2)
2016 (1)
2014 (1)
2010 (1)
2023 (1)
2022 (1)
2021 (1)

Lab affiliation

1 Shanghai Key Laboratory of Tuberculosis, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, PR China 2 Department of Microbiology and Immunology, Tongji University School of Medicine, Shanghai 200049, PR China 3 Clinical Translation Research Center, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, China. (1)
Northeast Agricultural University (1)

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Anthocyanin accumulation in the red-fleshed grape germplasm ZhongShan-HongYu through bulked segregant analysis and RNA-seq.

Not available

S-EPMC12576772 | biostudies-literature

Genome-Wide Identification of Glutathione S-Transferase and Expression Analysis in Response to Anthocyanin Transport in the Flesh of the New Teinturier Grape Germplasm 'Zhongshan-HongYu'.

Not available

S-EPMC9317864 | biostudies-literature

Multi-omics analysis of application on regulation of phosphorus transport in soybean root

The regulatory effects of uneven phosphorus supplies on phosphorus transport in soybean roots is still unclear. To further analyze the regulatory effects of low-phosphorus stress on phosphorus transport in soybean roots and the effects of uneven phosphorus application on the physiological mechanism ...

ORGANISM(S): Acyrthosiphon pisum (Pea aphid)

2022-10-14 | PXD035894 | Pride

Low phosphorus stress，phosphorus transport，transcriptomics，proteomics，metabonomics

Multiple omics reveal link between the microbiota-gut-brain axis and intracranial aneurysm rupture

Intracranial aneurysms (IAs) are benign cerebrovascular maladies characterized by pathological dilatation in the walls of intracranial arteries. However, spontaneous subarachnoid hemorrhage (SAH) resulting from aneurysm rupture poses a grave threat to the patient's life. Accumulating evidence imp...

2024-12-13 | MTBLS10263 | MetaboLights

Quantitative transcriptome analysis of a high-GSH producing Saccharomyces cerevisiae and the wild type based on the second generation sequencing.

The mutant Saccharomyces cerevisiae Y518 generated much more intracellular glutathione (GSH) than its counterpart dose. The RNA-seq based global transcriptome analysis was performed for exploring the potential mechanisms. Statistical analysis indicated that 1125 differentially expressed genes (fold-...

ORGANISM(S): Saccharomyces cerevisiae

2014-06-07 | E-GEOD-47787 | biostudies-arrayexpress

Metabolic reprogramming and mitochondrial dysfunction underlie β gonia arrest and niche cell dysfunction in sterile triploid oysters.

Not available

S-EPMC12722230 | biostudies-literature

Endogenous bacteria inhabiting the Ophiocordyceps highlandensis during fruiting body development.

Not available

S-EPMC8196446 | biostudies-literature

Serum proteomics under S-ketamine treatment with slow wave sleep changement

These data were about the serum of patients under treatment of S-ketamine whose N3 stage of sleep was enhanced with controls.

ORGANISM(S): Homo Sapiens

2023-03-08 | PXD040679 |

Expression data from QY and QYRC cell lines

We superinfected a hepatocellular carcinoma (HCC) cell line (QGY-7703,QY) with oncolytic parvovirus H1 (H-1PV) and acquired a group of resistant cells QYRC. Previous studies suggested that cells surviving H-1PV superinfection should behave somewhat similarly to normal cells. When compared with the Q...

ORGANISM(S): Homo sapiens

2016-01-12 | E-GEOD-76754 | biostudies-arrayexpress

Mycobacterium tuberculosis produces D-serine under hypoxia to limit CD8+ T cell-dependent immunity in mice

Interferon (IFN)-γ-producing CD8+ T cells are involved in control of Mycobacterium tuberculosis (Mtb) infection, in part by promoting antimicrobial activities of macrophages. Whether Mtb counters these responses, particularly during the hypoxic conditions that arise within granulomas during infectio...

ORGANISM(S): Mycobacterium tuberculosis OFXR-32

2024-08-10 | PXD050258 | Pride

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18 Results

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