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TranscriptomicsCOHCAP MIRA / 450k Comparison [MIRA]
Compare a single sample run with two different technologies: Illumina 450k methylation array and MIRA on NimbleGen This data is being published as a technical test of utility for a novel integrative genomic algorithm (COHCAP) Keywords: HES-2
ORGANISM(S): Homo sapiens 
2013-06-08 | E-GEOD-42734 | biostudies-arrayexpress
TranscriptomicsDefault DNA Methylation is Preceded by Broad, Low-Level Transcription in Fetal Male Germ Cells and Is Inversely Patterned by Dynamic H3K4 Methylation (ChIP-chip and MIRA-chip)
To understand what dictates the emerging patterns of de novo DNA methylation, we mapped DNA methylation, chromatin, and transcription changes in purified fetal mouse germ cells using MIRA-chip, ChIP-chip, and strand-specific RNA-seq, respectively. De novo methylation occurred without any apparent tr...
ORGANISM(S): Mus musculus 
2013-07-31 | E-GEOD-45836 | biostudies-arrayexpress
TranscriptomicsCOHCAP MIRA / 450k Comparison [450k]
Compare a single sample run with two different technologies: Illumina 450k methylation array and MIRA on NimbleGen This data is being published as a technical test of utility for a novel integrative genomic algorithm (COHCAP) Keywords: HES-2
ORGANISM(S): Homo sapiens 
2013-06-08 | E-GEOD-42707 | biostudies-arrayexpress
UnknownThe complete chloroplast genome of Forsythia mira, an endemic medicinal shrub in China.
Not available
S-EPMC7720978 | biostudies-literature
TranscriptomicsDNA methylation changes in fetal germ cells exposed to endocrine disruptors and in the next generation [methylation set 1]
According to recent reports, exposure to environmental endocrine disrupting chemicals (EDs) during pregnancy may harm multiple subsequent generations. We hypothesized that EDs must directly alter DNA methylation and/or transcription in the exposed fetal germ cells to affect the grandchild. In additi...
ORGANISM(S): Mus musculus 
2015-02-18 | E-GEOD-59539 | biostudies-arrayexpress
TranscriptomicsDNA methylation changes in fetal germ cells exposed to endocrine disruptors and in the next generation [methylation set 2]
According to recent reports, exposure to environmental endocrine disrupting chemicals (EDs) during pregnancy may harm multiple subsequent generations. We hypothesized that EDs must directly alter DNA methylation and/or transcription in the exposed fetal germ cells to affect the grandchild. In additi...
ORGANISM(S): Mus musculus 
2015-02-18 | E-GEOD-59542 | biostudies-arrayexpress
TranscriptomicsUVB irradiation does not directly induce detectable changes of DNA methylation in human keratinocytes
Unprotected exposure to UVB radiation from the sun and the resulting DNA damage are thought to be responsible for physiological changes in the skin and for a variety of skin cancers, including basal cell and squamous cell carcinoma and malignant melanoma. Although the mutagenic effects of UVB have b...
ORGANISM(S): Homo sapiens 
2013-01-30 | E-GEOD-42943 | biostudies-arrayexpress
TranscriptomicsRelationship between gene body DNA methylation and intragenic H3K9me3 and H3K36me3 chromatin marks
Analysis of cross talk of epigenetic marks in HBEC by using tilling arrays chr19. In Human Bronchial epithelia cells (HBEC), H3K9me3, H4K20me3, H3K4me3, H3K27me3, H3K36me3 and DNA methylation were profiled. In these cells, DNA methylation status was analyzed by MIRA and UnmethylCollector (UMC). Stud...
ORGANISM(S): Homo sapiens 
2011-03-31 | E-GEOD-26040 | biostudies-arrayexpress
TranscriptomicsGalectin-9 suppresses growth of hepatocellular carcinoma in vitro
Galectin-9 suppresses growth of Li-7 cells, a cell line of human hepatocellular carcinoma, in vitro study. Micro RNA expression of Li-7 cells, a cell line of hepatocellular carcinoma, with or without administration of galectin-9 were assessed in vitro.
ORGANISM(S): Homo sapiens 
2015-03-01 | E-GEOD-55665 | biostudies-arrayexpress
TranscriptomicsDefault DNA Methylation is Preceded by Broad, Low-Level Transcription in Fetal Male Germ Cells and Is Inversely Patterned by Dynamic H3K4 Methylation (RNA-Seq)
To understand what dictates the emerging patterns of de novo DNA methylation, we mapped DNA methylation, chromatin, and transcription changes in purified fetal mouse germ cells using MIRA-chip, ChIP-chip, and strand-specific RNA-seq, respectively. De novo methylation occurred without any apparent tr...
ORGANISM(S): Mus musculus 
2013-07-31 | E-GEOD-46953 | biostudies-arrayexpress
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