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TranscriptomicsMicroarray was used to study the gene expression of P. stutzeri A1501 under different growth conditions
Nitrogen fixation is a highly energy-demanding process and highly regulated at multiple levels. The two major signals that regulate nitrogen fixation in most diazotrophs are oxygen and ammonia. In order to study the complex regulated mechanism and to highlight the complete nitrogen fixing system in ...
ORGANISM(S): Pseudomonas stutzeri A1501 
2010-06-11 | E-GEOD-6572 | biostudies-arrayexpress
ProteomicsLC-MS based on TurboID proximity labeling technology: Screening for interacting proteins of AL7 and their differences
TurboID tags were fused to AL7 protein, and adjacent interacting proteins were enriched by biotin. The interacting proteins were identified by mass spectrometry after protein extraction, and the differences of interacting proteins before and after TMV treatment were analyzed
ORGANISM(S): Nicotiana Benthamiana 
2025-02-18 | PXD060894 |
ProteomicsTurboID-based proximity labeling identifies reticulon-like protein B2 as a pro-viral factor coopted for the biogenesis of viral replication organelles in plants
Although intensive studies have been performed to identify and characterize host factors involved in viral replication complex formation, the high dynamism of this process and the insoluble properties of the complex make it difficult to be analyzed comprehensively using traditional affinity purifica...
ORGANISM(S): Nicotiana Benthamiana 
2023-02-12 | PXD040073 |
ProteomicsProxitome profiling of a viral suppressors of RNA silencing identifies the DEAD-box RNA helicase RH20 as a positive regulator of antiviral RNA interference in Nicotiana benthamiana
In the prolonged arms race between viruses and their host plants, viruses usually encode viral suppressors of RNA silencing (VSR) to overcome the hosts' defense mechanism by inhibiting RNAi. Barley stripe mosaic virus (BSMV) is an RNA virus characterized by a positive single-stranded genetic structu...
ORGANISM(S): Nicotiana Benthamiana 
2024-02-20 | PXD049705 |
UnknownFunctional characterization, structural basis, and regio-selectivity control of a promiscuous flavonoid 7,4'-di-O-glycosyltransferase from Ziziphus jujuba var. spinosa.
Not available
S-EPMC10132108 | biostudies-literature
UnknownTMEM203 is a binding partner and regulator of STING-mediated inflammatory signaling in macrophages.
Not available
S-EPMC6697806 | biostudies-literature
ProteomicsN Gene TurboID (Group1 -p50)
Nicotiana benthamiana plants were infiltrated with three different constructs: 1) N-TurboID-3HA 2) NTIR-TurboID-3HA or 3) Citrine-TurboID-3HA. N-TurboID is the full length N-gene fused to TurboID, NTIR-Turbo is the TIR domain of the N-gene fused to turboID, and Citrine-TurboID is the control constru...
ORGANISM(S): Nicotiana Benthamiana (ncbitaxon:4100) 
2018-10-10 | MSV000083018 | MassIVE
ProteomicsN Gene TurboID (Group2 +p50)
Nicotiana benthamiana plants were infiltrated with three different constructs: 1) N-TurboID-3HA 2) NTIR-TurboID-3HA or 3) Citrine-TurboID-3HA. N-TurboID is the full length N-gene fused to TurboID, NTIR-Turbo is the TIR domain of the N-gene fused to turboID, and Citrine-TurboID is the control constru...
ORGANISM(S): Nicotiana Benthamiana (ncbitaxon:4100) 
2018-10-10 | MSV000083019 | MassIVE
UnknownEnzyme-catalysed [6+4] cycloadditions in the biosynthesis of natural products.
Not available
S-EPMC6944468 | biostudies-literature
ProteomicsSimultaneous removal of nitrogen and arsenite by heterotrophic nitrification and aerobic denitrification bacterium Hydrogenophaga sp. H7
Nitrogen and arsenic contaminants often coexist in groundwater, and microbes show the potential for simultaneous removal of nitrogen and arsenic. Here, we reported that Hydrogenophaga sp. H7 was heterotrophic nitrification and aerobic denitrification (HNAD) and arsenite [As(III)] oxidation bacterium...
ORGANISM(S): Hydrogenophaga Sp. H7 
2022-12-09 | PXD038710 |
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