Li Yuan Y - OmicsDI

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Unknown (10844)
Proteomics (343)
Transcriptomics (62)
Metabolomics (38)
Genomics (24)
Multiomics (3)
Other (2)
Models (1)

Organisms

Homo sapiens (139)
Mus musculus (60)
Rattus norvegicus (4)
Oryza sativa (4)
Drosophila melanogaster (4)
Macaca mulatta (3)
Arabidopsis thaliana (3)
Rattus rattus (3)
Sus scrofa domesticus (3)
Zea mays (2)
Periplaneta americana (2)
Severe acute respiratory syndrome coronavirus 2 (2)
cellular organisms (1)
Acromyrmex echinatior (1)
Deinococcus gobiensis (1)
Lilium longiflorum (1)
Populus tremula x Populus alba (1)
Saccharomyces cerevisiae (1)
Danio rerio (1)
Acidobacteriaceae bacterium A2-4c (1)
Anaplasma sp. Goat50/1 (1)
Anaplasma sp. goatC/1 (1)
Cucumis sativus (1)
Deinagkistrodon acutus (1)
Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 (1)
Diaphorina citri (1)
Elaeagnus angustifolia (1)
Gryllinae (1)
Haemaphysalis flava (1)
Hierodula patellifera (1)

Repository

pride (162)
iProX (154)
biostudies-arrayexpress (67)
MetaboLights (37)
EGA (19)
PeptideAtlas (14)
MassIVE (12)
jPOST (2)
BioModels (1)
GNPS (1)
GPMDB (1)

Tissue

Cell culture (40)
Epithelial cell (15)
Brain (13)
Plasma Non-glyco (11)
Permanent cell line cell (7)
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Blood cell (5)
Heart (5)
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Blood (4)
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Testis (4)
Male Reproductive System (2)
Abscission zone (2)
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Blood serum (2)
Bone marrow (2)
CNS neuron (sensu Vertebrata) (2)
Cell suspension culture (2)
Embryo (2)
Embryonic stem cell (2)
HEK-293T cell (2)
HeLa cell (2)
Hepatocyte (2)
Lung (2)
Mycelium (2)
Others (1)

Disease

Influenza (4)
Malaria (3)
Alzheimer's disease (2)
Autism spectrum disorder (2)
Breast cancer (2)
Cachexia (2)
Cardiovascular system disease (2)
Disease free (2)
Liver carcinoma (2)
Muscular atrophy (2)
Osteocytes/osteoblasts (1)
Not Available (1)
Carcinoma (1)
Cervix carcinoma (1)
Colon cancer (1)
Diffuse gastric cancer (1)
Esophageal carcinoma (1)
Lemierre's syndrome (1)
Liver cancer (1)
Lung carcinoma (1)
Mixed disorder as reaction to stress (1)
Nephrolithiasis (1)
Neuroblastoma (1)
Osteoarthritis (1)
Osteoporosis (1)
Pancreatic ductal adenocarcinoma (1)
Primary immunodeficiency disease (1)
Pulmonary tuberculosis (1)
Retinal disease (1)
Severe acute respiratory syndrome (1)

Technology Type

Mass Spectrometry (162)
Shotgun proteomics (63)
Bottom-up proteomics (33)
Mass spectrometry (31)
Data-dependent acquisition (21)
Data-independent acquisition (12)
Affinity purification coupled with mass spectrometry proteomics (11)
Gel-based experiment (10)
Top-down proteomics (9)
Mass spectrometry assay (5)
Proteogenomics (4)
SWATH MS (4)
Affinity proteomics (3)
All-ion fragmentation (2)
Olink affinity proteomics (2)
Illumina HiSeq 2500, ILLUMINA (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
SRM/MRM (1)

Instrument Platform

LTQ Orbitrap Velos (15)
Liquid Chromatography MS - positive - reverse phase (12)
Liquid Chromatography MS - negative - reverse phase (11)
Liquid Chromatography MS - positive - hilic (5)
Q Exactive (4)
Liquid Chromatography MS - negative (4)
Liquid Chromatography MS - alternating - reverse phase (4)
Liquid Chromatography MS - negative - hilic (4)
Orbitrap Fusion Lumos (2)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Liquid Chromatography MS - (2)
Liquid Chromatography MS - positive (2)
Instrument (1)
Bruker maXis ESI Quadrupole TOF (1)
Exactive Plus (1)
LTQ (1)
LTQ Orbitrap (1)
LTQ XL ETD (1)
Orbitrap Exploris 480 (1)
Q Exactive HF-X (1)
Agilent 7890 (1)
Xevo TQ MS (Waters) (1)
Gas Chromatography MS - positive - medium polarity - Flame ionisation detector MS - positive (1)
Agilent 5975E GC/MSD (Agilent) (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Xevo G2 QTOF (Waters) (1)
Exactive (Thermo Scientific) (1)
Xevo QTof MS (Waters) (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2022 (65)
2025 (60)
2024 (57)
2023 (46)
2026 (42)
2021 (33)
2015 (30)
2020 (27)
2013 (17)
2018 (13)
2019 (11)
2014 (10)
2017 (9)
2010 (9)
2012 (7)
2011 (7)
2016 (4)
2009 (1)
2008 (1)
2007 (1)

UNIPROT ID/AC

A5A3E0 (14)
A6NNZ2 (14)
B4E3A4 (14)
C9JM50 (14)
H0YM50 (14)
I3L4N8 (14)
J3KPS3 (14)
O75369 (14)
O75369-8 (14)
O95678 (14)
P00338 (14)
P00338-3 (14)
P00558 (14)
P02533 (14)
P02538 (14)
P02545 (14)
P02545-2 (14)
P02545-3 (14)
P04075 (14)
P04075-2 (14)
P04083 (14)
P04259 (14)
P04264 (14)
P04350 (14)
P04792 (14)
P05141 (14)
P05783 (14)
P05787 (14)
P06733 (14)
P07195 (14)

ENSEMBL ID

ENSG00000170477 (14)
ENSG00000147251 (5)
ENSG00000214897 (2)
ENSG00000229353 (2)
ENSG00000247315 (2)
ENSG00000204131 (1)

CHEBI ID

CHEBI:30769 (15)
CHEBI:17154 (13)
CHEBI:16704 (12)
CHEBI:15891 (12)
CHEBI:16040 (12)
CHEBI:17351 (12)
CHEBI:17368 (12)
CHEBI:17568 (11)
CHEBI:16919 (11)
CHEBI:30805 (10)
CHEBI:17405 (10)
CHEBI:30887 (10)
CHEBI:17750 (10)
CHEBI:17509 (10)
CHEBI:7916 (10)
CHEBI:15354 (10)
CHEBI:17596 (10)
CHEBI:15756 (10)
CHEBI:20067 (10)
CHEBI:17748 (9)
CHEBI:28875 (9)
CHEBI:37024 (9)
CHEBI:18237 (9)
CHEBI:17361 (9)
CHEBI:15741 (9)
CHEBI:16235 (9)
CHEBI:17562 (9)
CHEBI:16737 (9)
CHEBI:17895 (9)
CHEBI:22984 (1)

Metabolite Name

Creatinine (9)
Uracil (8)
Cytosine (8)
Hypoxanthine (8)
Betaine (7)
Adenosine (7)
Cytidine (7)
Inosine (7)
Leucine (6)
4-Pyridoxic acid (6)
Xanthurenic acid (6)
N-Acetylputrescine (6)
Guanine (6)
Palmitic acid (6)
Linoleic acid (6)
L-Glutamine (6)
Uridine (6)
Creatine (6)
Tryptophan (5)
Serine (5)
Lysine (5)
Citrulline (5)
Asparagine (5)
Phenylalanine (5)
Threonine (5)
Glutamine (5)
Ornithine (5)
Glycine (5)
Trigonelline (5)
Valine (5)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Modification

15.994915 (1)
57.021464 (1)
N6 (1)
Not available (1)

Study type

Transcription profiling by array (36)
RNA-seq of coding RNA (15)
ChIP-seq (4)
Unknown experiment type (3)
Other (3)
RNA-seq of non coding RNA (3)
Comparative genomic hybridization by array (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (1942)
2022 (1549)
2023 (1434)
2024 (1402)
2021 (1161)
2020 (846)
2019 (539)
2018 (462)
2017 (378)
2016 (278)
2026 (237)
2015 (217)
2014 (152)
2013 (117)
2012 (81)
2011 (38)
2010 (31)
2008 (16)
2009 (15)
2005 (6)
2006 (4)
2004 (4)
2007 (2)

Lab affiliation

Institute of Life and Health Engineering, College of Life Science and Technology, Jinan University (4)
BGI Research (3)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (3)
Sun Yat-sen University (3)
Central South University (2)
China Agricultural University (2)
College of Agronomy, Jiangxi Agricultural University (2)
Department of Developmental Neurobiology St. Jude Children's Research Hospital (2)
Institute of Genetics & Developmental Biology, Chinese Academy of Sciences (2)
Lab of Jie Zheng, Neuroscience Research Institute and Department of Neurobiology, School of Basic Medical Sciences, Peking University, Beijing 100083, P.R. China (2)
School of Life Sciences, Westlake University, Hangzhou, Zhejiang, China ( lab head ) (2)
School of Life Sciences, Xiamen University (2)
School of Pharmacy, University of Wisconsin-Madison (UW-Madison) (2)
Shanghai Jiao Tong University Affiliated Sixth People's Hospital (2)
Soochow University (2)
State Key Laboratory of Oncology in South China (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
State Key Laboratory of Reproductive Medicine, Nanjing Medical University (2)
The First Affiliated Hospital of Fujian Medical University (2)
1 Cancer Institute, Xuzhou Medical University, Xuzhou, Jiangsu, China. 2 Center of Clinical Oncology, The Affiliated Hospital of Xuzhou Medical University, Xuzhou, China. 3 State Key Laboratory Jiangsu Center for the Collaboration and Innovation of Cancer Biotherapy, Cancer Institute, Xuzhou Medical University, Xuzhou, Jiangsu, China. (1)
Advanced Water Management Centre, The University of Queensland (1)
Advanced Water Management Centre, The University of Queensland, St. Lucia, Brisbane, Queensland, Australia, 4072 (1)
Anonymity for double-blind review (1)
Australian Centre for Water and Environmental Biotechnology (formerly AWMC), University of Queensland (1)
BGI-Shenzhen (1)
Beijing Advanced Innovation Center for Soft Matter Science and Engineering, Beijing University of Chemical Technology (1)
Beijing Chest Hospital (1)
Beijing Key Laboratory for Prevention and Control of Infectious Diseases in Livestock and Poultry, Institute of Animal Husbandry and Veterinary Medicine, Beijing Academy of Agriculture and Forestry Sciences, Haidian District, Beijing, China. (1)
Beijing Key Laboratory of DNA Damage Response and College of Life Science, Capital Normal University, Beijing 100048, China (1)
Bioscience Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Kingdom of Saudi Arabia (1)

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The Pd (II) reduction mechanisms in Bacillus megaterium Y-4 revealed by proteomic analysis

Many studies have been conducted on microbial reduction of Pd (II) to palladium nanoparticles (PdNPs) due to the environmental friendliness, low cost and the decreased toxicity of Pd (II) ions. In this study, we investigate the reduction mechanism of Pd (II) by Bacillus megaterium Y-4 through proteo...

ORGANISM(S): environmental samples <bacteria

2024-05-24 | PXD049711 | Pride

Lc-msms Bacillus megaterium

Uniform Fe _x Ni _y Nanospheres: Cost-Effective Electrocatalysts for Nonaqueous Rechargeable Li-O₂ Batteries.

Not available

S-EPMC6641725 | biostudies-literature

Identification of kinship and occupant status in Mongolian noble burials of the Yuan Dynasty through a multidisciplinary approach.

Not available

S-EPMC4275886 | biostudies-literature

LGR4 modulates breast cancer initiation, metastasis, and cancer stem cells.

Not available

S-EPMC5901378 | biostudies-literature

The carrier transition from Li atoms to Li vacancies in solid-state lithium alloy anodes.

Not available

S-EPMC8443184 | biostudies-literature

Comparative metabolomic analysis of exudates of microcystin-producing and microcystin-free Microcystis aeruginosa strains

Cyanobacterial harmful algal blooms (cHABs) dominated by Microcystis aeruginosa threaten the ecological integrity and beneficial uses of lakes globally. In addition to producing hepatotoxic microcystins (MC), M. aeruginosa exudates (MaE) contain various compounds with demonstrat...

2023-01-16 | MTBLS6603 | MetaboLights

Macrobiotus hupingensis, a New Tardigrade Species in the Macrobiotus pallarii Complex from China.

Not available

S-EPMC10061298 | biostudies-literature

Improving the fast-charging capability of NbWO-based Li-ion batteries.

Not available

S-EPMC11897329 | biostudies-literature

Improved Electrochemical Performance of Li-Rich Cathode Materials via Spinel Li₂MoO₄ Coating.

Not available

S-EPMC10456268 | biostudies-literature

Modeling Familial Cancer with iPSC Approaches

In vitro modeling of human disease has recently become feasible with the adoption of induced pluripotent stem cell (iPSC) technology. Here, we established patient-derived iPSCs from an Li-Fraumeni Syndrome (LFS) family and investigated the role of mutant p53 in the development of osteosarcoma (OS). ...

ORGANISM(S): Homo sapiens

2015-04-10 | E-GEOD-58123 | biostudies-arrayexpress

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11314 Results

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