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TranscriptomicsFunctional Annotation of the Bovine Genome
The goal of the proposed project is to generate high-quality detailed transcript and chromatin status datasets from a comprehensive set of bovine tissues, developmental stages, and cells through a set of rationally selected assays. Experimental data generated by the project have been analyzed using ...
ORGANISM(S): Bos taurus 
2022-10-13 | E-MTAB-12052 | biostudies-arrayexpress
UnknownMapping and visualization of global research progress on deubiquitinases in ovarian cancer: a bibliometric analysis.
Not available
S-EPMC11424541 | biostudies-literature
TranscriptomicsTranscriptomic analyses of TCDD treated zebrafish liver
To fully understand molecular toxicity of TCDD in an in vivo animal model, adult zebrafish were exposed to TCDD at 10 nM for 96 h and the livers were sampled for RNA-sequencing based transcriptomic profiling. A total of 1,058 differently expressed genes were identified based on fold-change>2 and TPM...
ORGANISM(S): Danio rerio 
2013-11-12 | E-GEOD-49915 | biostudies-arrayexpress
TranscriptomicsWhole transcriptome target sequencing: profiling gene expression and alternative polyadenylation with one pipeline.
We have developed a deep sequencing method called Whole Transcriptome Target Sequencing (WTTS), which sequences the 3’ ends of polyA+ RNA. This method can simultaneously profile gene expression and alternative polyadenylation. A pooled total RNA sample derived from three male and three female adul...
ORGANISM(S): Xenopus tropicalis 
2016-07-22 | E-GEOD-74919 | biostudies-arrayexpress
Proteomicsm6A demethylase FTO stabilizes LINK-A to exert oncogenic roles via MCM3-mediated cell cycle progression and HIF-1α activation
To further delineate the downstream regulatory mechanism underlying the oncogenic roles of LINK-A, we performed mass spectrometry (MS) analyses to identify proteins precipitated with LINK-A in KYSE450 and YES2 cells. In total, 43 and 14 LINK-A-interacting proteins were identified in KYSE450 and YES2...
ORGANISM(S): Homo Sapiens 
PXD045414 |
ProteomicsQuantitative proteomics combine with affinity MS revealed the molecular mechanism of ginsenoside anti-tumor effects
The Tandem Mass Tag (TMT) labeling quantitative proteomics technique acquired 55620 MS/MS spectra that identified 5499 proteins and 3045 modified proteins. Of these identified proteins, 224 differentially expressed proteins and modified proteins were significantly altered in non-small cell lung canc...
ORGANISM(S): Homo Sapiens 
2019-02-17 | PXD020149 |
UnknownCell cycle arrest explains the observed bulk 3D genomic alterations in response to long-term heat shock in K562 cells.
Not available
S-EPMC9341516 | biostudies-literature
Proteomics,MultiomicsProteome analysis of human lymphotropic tumor viruses
Detection/identification of virola proteins from tumor cells
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2015-02-12 | MSV000079036 | MassIVE
TranscriptomicsSMN2 splicing modifiers improve motor function and longevity in mice with spinal muscular atrophy
Characterization of the selectivity of SMN splicing modifiers in SMA type I fibroblasts by RNASeq In total 12 samples were analyzed, divided into four distinct groups (treated with SMN-C3 @ 500 nM; controls for SMN-C3; treated with SMN-C1 @ 100 nM; controls for SMN-C1) containing 3 replicates each.
ORGANISM(S): Homo sapiens 
2014-10-22 | E-GEOD-62540 | biostudies-arrayexpress
ProteomicsHuman Protein Complexes Project LTQ RAW FILES
Cellular processes often depend on stable physical associations between proteins. Despite recent progress, knowledge of the composition of human protein complexes remains limited. To close this gap, we applied an integrative global proteomic profiling approach, based on chromatographic separation of...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2012-10-16 | MSV000078257 | MassIVE
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