Liang Mei M - OmicsDI

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Transcriptomics (324)
Unknown (134)
Genomics (47)
Proteomics (26)
Metabolomics (3)

Organisms

Homo sapiens (144)
Mus musculus (60)
Caenorhabditis elegans (32)
Saccharomyces cerevisiae (23)
Arabidopsis thaliana (17)
Rattus norvegicus (7)
Bos taurus (7)
Escherichia coli (6)
Drosophila melanogaster (5)
Danio rerio (5)
Pimephales promelas (4)
Candida albicans (4)
Sus scrofa (4)
Bordetella pertussis (3)
Oncorhynchus mykiss (3)
Escherichia coli K-12 (3)
Oryza sativa (3)
Saccharomyces cerevisiae SK1 (2)
Yersinia pestis (2)
Xenopus laevis (2)
Streptomyces coelicolor (2)
Medicago truncatula (2)
Mycobacterium tuberculosis (2)
Salmonella enterica subsp. enterica serovar Typhimurium (2)
Salmo salar (2)
Gallus gallus (2)
Propionibacterium freudenreichii (1)
Metallosphaera sedula DSM 5348 (1)
Saccharomyces cerevisiae W303 (1)
Brassica oleracea (1)

Repository

biostudies-arrayexpress (372)
jPOST (14)
pride (8)
iProX (4)
MetaboLights (3)
EGA (1)

Tissue

Blood cell (2)
Cell culture (2)
Epithelial cell (1)
Leaf (1)
Lung (1)
Uterine smooth muscle cell (1)

Disease

Normal (3)
Acute leukemia (2)
Unclassified carcinoid (1)
"hepatocellular adenoma" (1)
Giant cell glioblastoma (1)
Rheumatoid arthritis (1)
Colon carcinoma (1)
Hypertensive (1)
Disease free (1)

Technology Type

Mass Spectrometry (8)
Mass spectrometry (3)
Data-dependent acquisition (3)
Top-down proteomics (3)
Shotgun proteomics (2)
Bottom-up proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (7)
NextSeq 500 (7)
Illumina HiSeq 2500 (4)
Illumina HiSeq 2000 (4)
BGISEQ-500 (3)
NextSeq 550 (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
ScanArray 5000 [PerkinElmer] (1)
Chemostat (1)
Axon- GenePix4000B (1)
GenePix 4000B [Axon Instruments] (1)
Axon GenePix 4000B scanning hardware (1)
Illumina NovaSeq X (1)
NextSeq 2000 (1)
DNBSEQ-G400 (1)
Illumina MiSeq (1)
Illumina HiSeq 4000 (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)

Publication Date

2011 (59)
2010 (44)
2013 (42)
2014 (40)
2015 (33)
2016 (28)
2012 (26)
2008 (26)
2025 (20)
2009 (17)
2007 (13)
2026 (11)
2022 (11)
2021 (8)
2006 (7)
2019 (3)
2023 (2)
2020 (2)
2018 (2)
2017 (2)
2005 (2)
2024 (2)
2004 (1)

CHEBI ID

CHEBI:10002 (1)
CHEBI:10022 (1)
CHEBI:10037 (1)
CHEBI:10070 (1)
CHEBI:10072 (1)
CHEBI:10106 (1)
CHEBI:101064 (1)
CHEBI:10138 (1)
CHEBI:10432 (1)
CHEBI:10577 (1)
CHEBI:10607 (1)
CHEBI:107634 (1)
CHEBI:107641 (1)
CHEBI:107662 (1)
CHEBI:11060 (1)
CHEBI:113528 (1)
CHEBI:113543 (1)
CHEBI:116314 (1)
CHEBI:122 (1)
CHEBI:131989 (1)
CHEBI:132121 (1)
CHEBI:132244 (1)
CHEBI:132267 (1)
CHEBI:132471 (1)
CHEBI:132506 (1)
CHEBI:132634 (1)
CHEBI:132789 (1)
CHEBI:132793 (1)
CHEBI:132853 (1)
CHEBI:133348 (1)

Metabolite Name

(+)-(s)-carvone (1)
(+)-ar-turmerone (1)
(+)-catechin (hydrate) (1)
(+/-)-c75 (1)
(+/-)-cannabichromeorcin (1)
(+/-)-cp 47,497-c7-hydroxy metabolite (1)
(-)-a-pinene (1)
(-)-camphanic acid (1)
(-)-camphor (1)
(-)-caryophyllene oxide (1)
(-)-epigallocatechin (1)
(-)-gallocatechin (1)
(-)-isopulegol (1)
(-)-pentazocine (1)
(-)-syringaresinol di-o-glucoside (1)
(1ar,2s,5s,6r,7r,7as)-5-methyl-1a-(3-methyl-2-buten-1-yl)-1a,3,5,6,7,7a-hexahydro-2h-oxireno[g]isochromene-2,6,7-triol (1)
(1r,3r,8s,10r,13s,16s,17r)-6,12,17-trihydroxy-16-methyl-8-(2-methyl-2-propanyl)-2,4,14,19-tetraoxahexacyclo[8.7.2.01,11 03,7 07,11 013,17]nonadecane-5,15,18-trione (1)
(1r,9r)-5-cyclohexyl-11-(propylsulfonyl)-7,11-diazatricyclo[7.3.1.02,7]trideca-2,4-dien-6-one (1)
(2e,4ar,6r,7s,8e,10r)-10-acetoxy-4a-hydroxy-1,1,3,6,9-pentamethyl-4-oxo-1a,4,4a,5,6,7,7a,10,11,11a-decahydro-1h-cyclopenta[a]cyclopropa[f][11]annulen-7-yl benzoate (1)
(2s,3s)-3,5,7-trihydroxy-6-methyl-2-(3,4,5-trihydroxyphenyl)-2,3-dihydro-4h-chromen-4-one (1)
(3ar,4s,6r,11ar)-6,9-dihydroxy-6,10-dimethyl-3-methylene-2,7-dioxo-2,3,3a,4,5,6,7,8,9,11a-decahydrocyclodeca[b]furan-4-yl methacrylate (1)
(3as,10ar,10br)-6,10a-dimethyl-3-methylene-3,3a,4,5,7,8,10a,10b-octahydrofuro[3',2':6,7]cyclohepta[1,2-b]pyran-2,9-dione (1)
(3e,12e)-3,12-dimethyl-8-methylene-6,18-dioxatricyclo[14.2.1.05,9]nonadeca-3,12,16(19)-triene-7,17-dione (1)
(4e)-1,7-bis(4-hydroxyphenyl)-4-hepten-3-one (1)
(5r,6s)-5-hydroxy-4-methoxy-6-(2-phenylethyl)-5,6-dihydro-2h-pyran-2-one (1)
(7r,8s)-7,8-dihydroxy-3,7-dimethyl-6-oxo-7,8-dihydro-6h-isochromene-5-carbaldehyde (1)
(8e)-11,13-dihydroxy-4-methyl-4,5,6,7-tetrahydro-2h-3-benzoxacyclododecine-2,10(1h)-dione (1)
(<u+00b1>)-abscisic acid (1)
1,3,5-trimethoxybenzene (1)
1,4-androstadiene-3,17-dione (1)

Study type

Transcription profiling by array (186)
ChIP-seq (42)
RNA-seq of coding RNA (38)
Comparative genomic hybridization by array (30)
Methylation profiling by array (12)
Other (11)
ChIP-chip by tiling array (8)
ChIP-chip by array (7)
RNA-seq of coding RNA from single cells (5)
Unknown experiment type (4)
Transcription profiling by tiling array (4)
Genotyping by array (4)
RNA-seq of total RNA (4)
DNA-seq (3)
Single nucleus RNA sequencing (2)
MNase-seq (1)
Differential (1)
Human - High-throughput sequencing (1)
Cell line - One-color microarray (1)
High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
RNAi profiling by array (1)
Genotyping by high throughput sequencing (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2011 (60)
2013 (45)
2010 (44)
2015 (40)
2014 (40)
2025 (34)
2016 (33)
2012 (28)
2008 (26)
2022 (21)
2021 (19)
2009 (17)
2024 (17)
2023 (15)
2020 (14)
2007 (13)
2026 (10)
2019 (7)
2018 (7)
2006 (7)
2017 (6)
2005 (2)
2004 (1)

Lab affiliation

Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Anhui Province Key Laboratory of Medical Physics and Technology, Institute of Health and Medical Technology, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei, Anhui 230031, P. R. China University of Science and Technology of China, Hefei, Anhui 230026, P. R. China Hefei Cancer Hospital, Chinese Academy of Sciences, Hefei, Anhui 230031, P. R. China Precision Medicine Research Laboratory of Anhui Province, Hefei, Anhui 230088, P. R. China (1)
College of life sciences and technology,Guangxi University (1)
Director, Simon F.S. Li Marine Science Laboratory, CUHK, Hong Kong Associate Professor, School of Life Sciences, CUHK, Hong Kong (1)
Laboratory of Stem Cell and Tissue Engineering, Orthopedic Research Institute, Department of Orthopedics, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu, Sichuan 610041, China. (1)
School of Life Sciences and Technology, Tongji University (1)
The First Affiliated Hospital of Chongqing Medical University (1)

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Human Monocytes to M-CSF differentiated Macrophages

This dataset was created to study M-CSF dependent in vitro differentiation of human monocytes to macrophages as a model process to demonstrate that independent component analysis (ICA) is a useful tool to support and extend knowledge-based strategies and to identify complex regulatory networks or no...

ORGANISM(S): Homo sapiens

2011-11-07 | E-GEOD-9801 | biostudies-arrayexpress

OpiCa1 Modulates Cardiomyocyte Viability Through PI3K/Akt Inhibition with Minimal Systemic Impact Beyond RyR Targeting.

Not available

S-EPMC12656661 | biostudies-literature

Genomic comparison of M. tuberculosis PDIM spontaneous mutants

Genomic comparisons among PDIM positive and negative isolates. Standard in vitro exponential phase cultures of M. tuberculosis H37Rv ATCC27294 were plated on 7H11 plates. Individual colonies were sub-cultured in 7H9 broth and metabolically labeled with [14C] propionic acid. The apolar lipid fraction...

ORGANISM(S): Mycobacterium tuberculosis

2010-05-16 | E-GEOD-17232 | biostudies-arrayexpress

Transcription profiling of Pseudomonas putida mt-2 with TOL plasmid in response to pWW0 m-xylene, o-xylene, 3MBA and heat shock

A sub-genomic array of structural and regulatory genes of the TOL plasmid pWW0 of Pseudomonas putida mt-2 has been taiolored for inferring the genetic network of m-xylene metabolism through expression profiling of xyl genes. To this end we visualized the response to m-xylene, o-xylene, 3MBA and to a...

ORGANISM(S): Pseudomonas putida

2006-01-01 | E-MEXP-305 | biostudies-arrayexpress

The dynamics of DNA methylation fidelity during mouse embryonic stem cell renewal and differentiation

Purpose: we aimed to gain a genome-wide view of the dynamics in DNA methylation inheritance and define the factors associated with methylation fidelity. Methods: Using mouse embryonic stem cell (ES-E14TG2a) in both undifferentiated and differentiated states as a model system, we exploited the hairpi...

ORGANISM(S): Mus musculus

2014-05-12 | E-GEOD-48229 | biostudies-arrayexpress

Meiotic DNA double strand breaks in the yeast Saccaromyces cerevisiae

DNA double-strand breaks (DSBs) initiate meiotic recombination. Past DSB-mapping studies have used rad50S or sae2? mutants, which are defective in break processing, to accumulate DSBs, and report large (= 50 kb) “DSB-hot” regions that are separated by “DSB-cold” domains of similar size. Substantial ...

ORGANISM(S): Saccharomyces cerevisiae

2007-12-30 | E-GEOD-8981 | biostudies-arrayexpress

The Impact of Risk Perception on Social Distancing during the COVID-19 Pandemic in China.

Not available

S-EPMC7503995 | biostudies-literature

Transcription profiling of mouse mammary tumor-initiating cells

Using a syngeneic p53 null mouse mammary gland tumor model that closely mimics human breast cancer, we have identified by limiting dilution transplantation as well as in vitro mammosphere and clonogenic assays a Lin-CD29HighCD24High subpopulation of tumor-initiating cells. Differentially expressed ...

ORGANISM(S): Mus musculus

2008-10-18 | E-GEOD-8863 | biostudies-arrayexpress

A high-quality genome assembly of Morinda officinalis, a famous native southern herb in the Lingnan region of southern China.

Not available

S-EPMC8166937 | biostudies-literature

Microarray profiling of polyploid macrophage progeny

To explore how bacterial lipoproteins (i.e. TLR2 ligands) increased macrophage ploidy via mitotic defects, we performed global analysis of cell cycle gene expression changes induced by bacterial lipoproteins. FSL-1 (Pam2CGDPKHPKSF) is a synthetic lipoprotein that represents the N-terminal part of th...

ORGANISM(S): Mus musculus

2016-10-27 | E-MTAB-5085 | biostudies-arrayexpress

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