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ProteomicsSite-specific mapping and quantification of protein S-sulphenylation in cells

Jing Yang, Vinayak Gupta, Kate S. Carroll, & Daniel C. Liebler, (2014) Nature Communications 5, 4776, doi:10.1038/ncomms5776

Cysteine S-sulphenylation provides redox regulation of protein f...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2019-08-28 | MSV000084244 | MassIVE
ProteomicsYang: Site-specific mapping and quantification of protein S-sulfenylation in cells
The files in this archive represent the supporting data for "Site-specific mapping and quantification of protein S-sulfenylation in cells," a paper to appear in Nature Communications (2014). The authors are Jing Yang, Vinayak Gupta, Kate S. Carroll, and Daniel C. Liebler, working at Vanderbilt Univ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2014-07-10 | MSV000078777 | MassIVE
ProteomicsAlkylation Damage by Lipid Electrophiles Targets Functional Protein Systems
These data correspond to "Alkylation Damage by Lipid Electrophiles Targets Functional Protein Systems," a paper from Codreanu, Liebler, et al, published at the journal _Molecular and Cellular Proteomics_ in 2013. Modifications also include: 4-hydroxynonenal (HNE) (UniMod #53), H(16) C(9) O(2), Mono...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2013-11-18 | MSV000078490 | MassIVE
ProteomicsProteogenomic characterization of human colon and rectal cancer
Explore This Study at the NCI Proteomic Data Commons

Zhang, B., et al., Nature (2014) do...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2019-08-26 | MSV000084238 | MassIVE
ProteomicsEfficient micro-scale basic reverse phase peptide fractionation for global and targeted proteomics
This work describes a micro-scale basic reverse phase liquid chromatographic (bRPLC) fractionation method that offers high reproducibility and efficiency for peptide mixtures from small (5-20 g) samples. Shotgun and targeted proteomic analysis were performed to detect differentially expressed prote...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2016-02-09 | MSV000079500 | MassIVE
ProteomicsProtein tyrosine kinases analysis by multiplexed parallel reaction monitoring assays
In this study, we have developed a parallel reaction monitoring (PRM)-based assay for quantitative profiling of 83 PTKs. The assay detects 308 proteotypic peptides from 54 receptor tyrosine kinases and 29 nonreceptor tyrosine kinases in a single run. We used this assay to determine PTKs in lung canc...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2015-08-12 | MSV000079224 | MassIVE
ProteomicsCPTAC proteomic analysis of TCGA colon and rectal carcinomas using standard and customized databases
The goal of the CPTAC, TCGA Cancer Proteome Study of Colorectal Tissue is to analyze the proteomes of TCGA tumor samples that have been comprehensively characterized by molecular methods. Ninety-five TCGA tumor samples were used in this study.
ORGANISM(S): Homo sapiens (Human) 
2022-03-01 | PXD001945 | Pride
Cptac cptac-tcga_colorectal_cancer cptac-vu 
ProteomicsAlkylation Damage by Lipid Electrophiles-- HNE-induced expression in RKO cells
4-hydroxynonenal (HNE) (UniMod 53) (+156.115030 Da on Cys, His, Lys) reduced 4-Hydroxynonenal (UniMod 335(+158.130680 Da on Cys, His, Lys) These data were additions to the set for the paper Alkylation Damage by Lipid Electrophiles Targets Functional Protein Systems by Codreanu et al, Mol. Cell. Pro...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2013-12-18 | MSV000078512 | MassIVE
ProteomicsCPTAC proteomic analysis of TCGA colon and rectal carcinomas using standard and customized databases, part 5
The goal of the CPTAC, TCGA Cancer Proteome Study of Colorectal Tissue is to analyze the proteomes of TCGA tumor samples that have been comprehensively characterized by molecular methods. Ninety-five TCGA tumor samples were used in this study.
ORGANISM(S): Homo sapiens (Human) 
2015-06-15 | PXD002045 | Pride
Cptac cptac-tcga_colorectal_cancer cptac-vu 
ProteomicsCPTAC proteomic analysis of TCGA colon and rectal carcinomas using standard and customized databases, part 2
The goal of the CPTAC, TCGA Cancer Proteome Study of Colorectal Tissue is to analyze the proteomes of TCGA tumor samples that have been comprehensively characterized by molecular methods. Ninety-five TCGA tumor samples were used in this study.
ORGANISM(S): Homo sapiens (Human) 
2015-06-15 | PXD002042 | Pride
Cptac cptac-tcga_colorectal_cancer cptac-vu 
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